Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 5.2e-51 204.1 107 100.0
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 1.7e-49 199.1 109 98.2
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 9.2e-48 193.4 107 90.7
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 2.1e-47 192.2 107 89.7
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 2.1e-47 192.2 107 95.3
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 1.5e-45 186.0 107 86.9
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 4.7e-44 181.0 107 85.0
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 6.2e-44 180.6 107 84.1
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 4.4e-42 174.5 107 79.4
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 1.1e-40 169.9 109 78.9
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 1.9e-40 169.1 110 80.0
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.9e-40 169.1 107 80.4
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 2.4e-40 168.7 106 77.4
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 7.1e-40 167.2 108 76.9
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 2.9e-33 145.2 112 63.4
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 1.6e-31 139.4 95 75.8
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 1.6e-31 139.4 95 75.8
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 1.3e-25 119.8 86 74.4
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 1.3e-25 119.8 86 74.4
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.9e-24 115.9 107 54.2
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 2.1e-23 112.5 107 54.2
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 6.7e-22 107.5 107 52.3
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 8.7e-22 107.1 107 51.4
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.5e-21 106.3 107 51.4
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.9e-21 105.9 107 50.5
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.9e-21 105.9 110 52.7
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 2.5e-21 105.5 107 52.3
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 9.6e-21 103.6 107 49.5
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 9.6e-21 103.6 107 50.5
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 1.3e-20 103.2 49 93.9
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 1.3e-20 103.2 107 48.6
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.6e-20 102.8 107 48.6
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.6e-20 102.8 107 48.6
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 2.1e-20 102.4 107 48.6
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 2.1e-20 102.4 107 49.5
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 2.8e-20 102.1 107 47.7
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.8e-20 102.1 107 48.6
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 2.8e-20 102.1 107 47.7
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.7e-20 101.7 107 47.7
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 6.2e-20 100.9 105 48.6
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 6.2e-20 100.9 107 47.7
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 6.2e-20 100.9 111 46.8
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 1.1e-19 100.1 107 50.5
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.1e-19 100.1 107 48.6
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 1.4e-19 99.8 107 46.7
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.4e-19 99.8 107 47.7
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 1.8e-19 99.4 111 50.5
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 3.1e-19 98.6 47 93.6
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 3.1e-19 98.6 111 49.5
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 3.1e-19 98.6 106 48.1
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 4.0e-19 98.2 110 48.2
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 5.3e-19 97.8 107 48.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 5.3e-19 97.8 106 48.1
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 5.3e-19 97.8 64 67.2
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 9.0e-19 97.1 107 49.5
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 9.0e-19 97.1 107 48.6
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 1.2e-18 96.7 111 47.7
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 1.2e-18 96.7 64 65.6
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 4.5e-18 94.7 65 63.1
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 4.5e-18 94.7 111 45.9
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 4.5e-18 94.7 107 47.7
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 5.8e-18 94.4 78 60.3
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 5.8e-18 94.4 108 48.1
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.3e-17 93.2 111 47.7
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 1.3e-17 93.2 108 47.2
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 1.3e-17 93.2 112 46.4
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 2.2e-17 92.4 111 45.0
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 2.2e-17 92.4 111 45.0
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 2.9e-17 92.0 108 46.3
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 2.9e-17 92.0 108 46.3
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 3.8e-17 91.7 108 47.2
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 3.8e-17 91.7 108 47.2
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 6.4e-17 90.9 77 54.5
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 1.4e-16 89.7 64 60.9
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 1.9e-16 89.4 110 43.6
Carub.0003s3142 Capsella rubella HOM05D005781 ORTHO05D006835 2.4e-16 89.0 83 57.8
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.4e-16 89.0 95 48.4
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 3.2e-16 88.6 111 42.3
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 3.2e-16 88.6 107 43.0
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 4.2e-16 88.2 107 43.0
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 5.5e-16 87.8 107 43.0
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 5.5e-16 87.8 107 42.1
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 5.5e-16 87.8 64 54.7
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 7.1e-16 87.4 64 59.4
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 7.1e-16 87.4 107 43.9
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 9.3e-16 87.0 111 43.2
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.2e-15 86.7 107 45.8
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 1.6e-15 86.3 88 53.4
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 1.6e-15 86.3 106 39.6
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 2.7e-15 85.5 64 59.4
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 2.7e-15 85.5 63 60.3
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 6.0e-15 84.3 104 46.2
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 6.0e-15 84.3 106 43.4
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 7.9e-15 84.0 65 61.5
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 2.3e-14 82.4 110 40.0
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.0e-14 82.0 107 43.9
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 3.0e-14 82.0 107 43.9
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.0e-14 82.0 107 43.9
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 3.9e-14 81.6 107 43.0
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 5.1e-14 81.3 99 45.5
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 6.7e-14 80.9 95 41.1
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 8.7e-14 80.5 108 45.4
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 1.1e-13 80.1 64 56.2
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 2.5e-13 79.0 108 44.4
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 3.3e-13 78.6 99 44.4
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 4.3e-13 78.2 95 44.2
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 5.6e-13 77.8 95 40.0
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 1.6e-12 76.3 95 42.1
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 2.8e-12 75.5 95 42.1
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.7e-12 75.1 147 36.1
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 3.7e-12 75.1 51 70.6
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 3.7e-12 75.1 95 41.1
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 4.8e-12 74.7 95 43.2
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.8e-11 72.8 102 41.2
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.8e-11 72.8 52 61.5
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.1e-11 72.0 99 41.4
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 4.0e-11 71.6 95 43.2
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 6.9e-11 70.9 60 51.7
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 1.5e-10 69.7 58 53.4
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.0e-10 69.3 95 37.9
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 2.6e-10 68.9 54 53.7
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 5.8e-10 67.8 99 38.4
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.3e-09 66.6 95 41.1
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 1.1e-08 63.5 46 56.5
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 1.4e-08 63.2 98 37.8
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 5.5e-08 61.2 63 54.0
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 7.1e-08 60.8 52 50.0
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 9.3e-08 60.5 52 48.1
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 1.2e-07 60.1 99 35.4
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 3.5e-07 58.5 84 39.3
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 6.0e-07 57.8 63 46.0
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 6.0e-07 57.8 52 46.2
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 3.0e-06 55.5 47 44.7


User provided reference genes

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