Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 3.5e-113 411.8 226 100.0
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 4.3e-103 378.3 228 87.3
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 8.3e-99 364.0 189 94.2
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 4.4e-92 341.7 226 75.2
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 7.8e-89 330.9 229 74.7
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 8.7e-80 300.8 187 78.1
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 8.7e-80 300.8 230 72.2
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 8.7e-80 300.8 187 78.1
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-79 300.4 230 74.8
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-79 300.1 229 69.9
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-79 300.1 229 71.6
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 7.3e-79 297.7 230 73.0
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 9.6e-79 297.4 228 72.4
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 2.8e-78 295.8 228 70.2
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-76 290.4 231 71.0
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-76 289.3 230 69.6
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 4.4e-76 288.5 165 84.2
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 2.9e-75 285.8 178 77.0
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 3.8e-75 285.4 167 81.4
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 3.2e-74 282.3 165 82.4
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 9.3e-74 280.8 221 72.9
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 7.9e-73 277.7 226 64.6
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 3.3e-71 272.3 160 87.5
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 3.8e-67 258.8 228 66.2
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 4.9e-67 258.5 196 69.9
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-65 251.9 184 70.7
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-64 250.8 193 68.9
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 8.1e-62 241.1 234 61.5
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-61 239.2 154 77.9
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 6.9e-61 238.0 237 63.7
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-59 234.2 227 55.9
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-55 219.9 230 62.2
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 8.2e-54 214.5 230 60.9
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 3.5e-49 199.1 178 71.3
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 9.0e-45 184.5 224 45.1
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-43 180.3 167 56.9
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-42 176.4 117 94.9
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.9e-40 169.1 163 50.9
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.1e-40 168.7 163 51.5
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.3e-39 166.0 158 55.7
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 4.8e-38 162.2 152 53.9
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-37 159.1 230 44.3
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-36 157.5 173 49.7
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 2.9e-35 152.9 152 51.3
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-35 152.9 171 51.5
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.9e-35 152.9 171 51.5
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 5.0e-35 152.1 152 51.3
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 5.0e-35 152.1 152 51.3
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 8.5e-35 151.4 152 51.3
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 3.2e-34 149.4 152 50.7
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 3.2e-34 149.4 183 45.4
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 9.4e-34 147.9 152 51.3
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-33 147.5 174 47.1
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 2.7e-33 146.4 153 49.7
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.0e-32 142.9 174 46.6
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.7e-30 137.1 165 44.2
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-30 136.3 167 47.9
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.8e-29 133.7 173 41.0
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 5.3e-29 132.1 169 41.4
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.6e-28 129.8 180 40.0
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 5.9e-28 128.6 169 41.4
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.0e-27 127.9 177 40.7
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.2e-27 126.7 178 44.9
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.9e-27 126.3 154 44.8
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.5e-27 125.2 137 49.6
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.5e-27 124.8 153 46.4
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.5e-26 123.2 166 41.6
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.1e-25 120.2 151 39.7
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-24 117.5 151 41.7
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 6.7e-24 115.2 168 39.9
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-23 114.4 151 39.1
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.3e-23 112.8 156 38.5
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.5e-23 111.7 151 38.4
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 7.5e-23 111.7 143 47.6
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.7e-23 111.3 149 39.6
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 9.7e-23 111.3 143 47.6
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-22 109.8 154 44.8
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 7.0e-21 105.1 159 40.3
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-20 104.0 175 40.6
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-20 104.0 160 40.0
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-20 104.0 193 39.9
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-20 104.0 192 37.5
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 3.5e-20 102.8 166 41.0
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 4.5e-20 102.4 164 39.6
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.9e-20 102.1 160 41.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.9e-20 102.1 186 36.0
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.0e-19 101.3 155 41.3
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.3e-19 100.9 145 35.9
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-18 97.8 173 32.4
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-18 97.8 156 39.7
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-18 97.8 159 40.3
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.2e-18 96.3 163 40.5
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.7e-17 93.2 179 36.3
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.7e-17 93.2 179 36.3
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-17 92.8 169 39.1
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 4.7e-17 92.4 167 37.7
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 6.1e-17 92.0 160 38.1
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 6.1e-17 92.0 160 38.1
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 1.0e-16 91.3 105 49.5
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 1.0e-16 91.3 105 49.5
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 6.8e-16 88.6 181 34.3
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-15 87.8 162 37.7
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 4.4e-15 85.9 170 36.5
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 9.8e-15 84.7 177 34.5
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 1.7e-14 84.0 169 35.5
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 1.7e-14 84.0 169 36.1
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 1.7e-14 84.0 180 34.4
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.2e-14 83.6 169 36.1
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.8e-14 83.2 88 50.0
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 3.7e-14 82.8 169 34.9
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 3.7e-14 82.8 169 34.9
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 6.3e-14 82.0 160 36.9
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 1.8e-13 80.5 162 37.0
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.8e-13 80.5 157 39.5
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.4e-13 80.1 181 35.9
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 3.1e-13 79.7 196 32.1
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.1e-13 79.7 84 50.0
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.1e-13 79.3 124 38.7
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.4e-13 79.0 182 34.1
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.4e-13 79.0 182 34.1
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 7.0e-13 78.6 176 35.2
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 9.1e-13 78.2 164 37.2
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 9.1e-13 78.2 74 56.8
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.2e-12 77.8 159 34.0
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.6e-12 77.4 155 33.5
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.0e-12 77.0 153 34.6
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.0e-12 77.0 166 33.1
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.0e-12 77.0 166 33.1
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.5e-12 76.3 153 33.3
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 4.5e-12 75.9 151 35.8
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 5.9e-12 75.5 153 30.7
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.9e-12 75.5 178 36.0
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 5.9e-12 75.5 158 34.2
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 5.9e-12 75.5 155 31.0
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.7e-12 75.1 136 32.4
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 7.7e-12 75.1 179 33.0
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 7.7e-12 75.1 179 33.0
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.3e-11 74.3 162 35.2
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.9e-11 73.2 160 31.2
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.9e-11 73.2 181 32.0
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.9e-11 73.2 79 46.8
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.8e-11 72.8 164 35.4
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 5.0e-11 72.4 181 32.6
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 5.0e-11 72.4 179 33.0
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.5e-10 70.9 181 30.9
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.9e-10 70.5 170 31.8
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-09 67.8 179 33.5
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.6e-09 67.4 145 32.4
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 6.1e-09 65.5 187 32.6
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.0e-08 62.8 73 41.1
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 5.2e-08 62.4 172 31.4
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.0e-07 60.5 164 29.9
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.4e-07 59.3 163 33.1
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 9.8e-07 58.2 128 32.0
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 3.7e-06 56.2 55 54.5


User provided reference genes

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