Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 6.4e-126 454.1 236 100.0
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-119 433.0 225 99.6
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-116 422.5 226 98.2
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 8.4e-102 374.0 225 87.6
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-101 373.6 225 87.1
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-101 373.2 225 86.2
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.7e-100 369.0 225 86.2
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 5.1e-99 364.8 226 82.3
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 5.6e-98 361.3 226 81.0
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 2.0e-95 352.8 217 86.2
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-92 343.6 224 82.6
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-92 342.4 222 83.8
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-91 339.7 222 82.9
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.4e-85 320.1 200 82.5
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 3.1e-80 302.4 231 70.6
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-79 298.9 150 97.3
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 1.3e-78 297.0 229 72.5
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 5.0e-78 295.0 229 71.6
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 5.5e-77 291.6 224 67.4
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-75 285.8 231 68.8
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-72 276.6 165 81.2
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-72 276.2 189 74.1
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-72 276.2 189 74.1
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 6.1e-68 261.5 228 64.0
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-66 257.3 226 61.5
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-66 256.5 229 66.8
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 8.2e-65 251.1 230 63.5
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-64 250.0 195 71.3
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-62 243.8 233 60.9
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-62 243.8 193 69.9
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-54 217.2 226 58.8
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-54 216.9 226 58.8
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 6.1e-52 208.4 163 70.6
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 2.2e-49 199.9 230 50.9
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 8.5e-46 188.0 185 53.5
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.4e-42 175.6 161 52.2
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.4e-42 175.6 161 52.8
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 2.8e-41 172.9 179 60.9
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-39 167.2 225 43.1
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.0e-39 166.8 156 55.1
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 1.0e-38 164.5 225 43.6
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-38 163.7 225 45.8
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 8.6e-38 161.4 156 51.3
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 2.5e-37 159.8 177 50.3
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-35 154.5 161 53.4
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-35 153.7 183 47.5
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 1.8e-35 153.7 183 47.5
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-35 152.9 161 49.7
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 4.0e-35 152.5 183 45.9
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 5.2e-35 152.1 161 49.7
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 8.9e-35 151.4 161 49.1
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-34 150.2 161 49.1
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 5.7e-34 148.7 161 49.7
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 6.4e-33 145.2 173 45.7
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-32 143.3 201 43.8
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.0e-32 141.7 182 40.1
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.0e-30 137.9 172 42.4
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 6.6e-30 135.2 157 43.3
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.5e-29 134.0 178 40.4
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-29 133.7 157 42.0
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.5e-29 133.3 191 39.3
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.5e-29 131.3 168 43.5
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-28 131.0 183 43.7
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 8.0e-28 128.3 160 41.9
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.8e-27 125.2 149 47.7
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.8e-27 125.2 148 41.2
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-26 124.4 190 42.1
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-26 124.0 183 39.9
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.0e-26 123.6 214 36.0
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-26 123.2 121 66.1
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 5.8e-26 122.1 145 48.3
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 7.5e-26 121.7 145 48.3
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 1.9e-24 117.1 239 35.6
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.1e-24 115.9 182 37.4
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.4e-24 115.5 175 38.3
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-23 114.4 173 36.4
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.0e-23 112.1 144 39.6
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.8e-19 98.6 231 30.3
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-18 97.8 200 36.0
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-18 97.4 192 34.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.4e-18 95.9 187 34.8
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 5.8e-18 95.5 164 37.2
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.5e-18 95.1 194 36.6
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 9.8e-18 94.7 166 37.3
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-17 94.0 193 35.2
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.4e-17 92.0 226 35.0
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 6.4e-17 92.0 192 35.4
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 8.3e-17 91.7 206 33.0
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.9e-16 90.5 175 36.0
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-15 87.8 155 38.7
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-15 87.8 155 38.7
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 3.5e-15 86.3 203 35.0
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.5e-15 86.3 163 36.8
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.0e-15 85.5 214 34.6
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-14 84.7 236 32.6
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 1.3e-14 84.3 101 44.6
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 1.3e-14 84.3 101 44.6
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 2.5e-13 80.1 165 33.9
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 9.5e-13 78.2 160 36.2
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 1.2e-12 77.8 186 33.9
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-12 77.0 161 36.0
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 2.8e-12 76.6 158 34.2
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 2.8e-12 76.6 158 34.2
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.6e-12 76.3 178 34.3
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.2e-12 75.5 96 42.7
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 8.1e-12 75.1 164 34.1
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 8.1e-12 75.1 190 32.6
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 8.1e-12 75.1 190 32.6
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 1.1e-11 74.7 161 34.8
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.4e-11 74.3 74 51.4
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.4e-11 74.3 85 48.2
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.8e-11 73.9 160 30.6
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.3e-11 73.6 155 32.9
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 2.3e-11 73.6 207 29.0
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.1e-11 73.2 124 35.5
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 3.1e-11 73.2 184 31.5
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 3.1e-11 73.2 157 35.0
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 8.9e-11 71.6 184 29.9
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 8.9e-11 71.6 166 33.1
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 8.9e-11 71.6 166 33.1
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.5e-10 70.9 185 31.9
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.5e-10 70.9 199 31.7
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.5e-10 70.9 186 31.2
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.6e-10 70.1 135 31.1
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.4e-10 69.7 92 42.4
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 4.4e-10 69.3 184 32.6
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 4.4e-10 69.3 160 33.8
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 5.8e-10 68.9 134 36.6
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 5.8e-10 68.9 134 36.6
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 5.8e-10 68.9 134 36.6
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 7.6e-10 68.6 157 31.2
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 7.6e-10 68.6 124 34.7
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 9.9e-10 68.2 153 32.7
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.7e-09 67.4 166 33.1
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.7e-09 67.4 180 30.0
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.2e-09 67.0 195 33.3
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 2.9e-09 66.6 160 33.8
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 3.7e-09 66.2 160 33.8
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.9e-09 65.9 78 43.6
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 4.9e-09 65.9 225 29.8
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 6.4e-09 65.5 190 28.9
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 6.4e-09 65.5 93 40.9
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 1.1e-08 64.7 158 31.6
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.2e-08 63.2 158 28.5
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 3.2e-08 63.2 145 32.4
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.1e-08 62.8 190 30.5
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.2e-07 61.2 183 29.5
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.6e-07 59.3 222 27.5
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.6e-07 59.3 201 29.9
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 7.8e-07 58.5 230 27.0
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.3e-06 57.8 162 29.6
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 2.3e-06 57.0 55 52.7
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.1e-06 55.8 155 33.5


User provided reference genes

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