Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.9e-296 1021.9 585 100.0
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 4.4e-293 1010.7 592 98.8
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.2e-263 912.9 587 92.5
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-249 866.3 589 89.3
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-231 806.6 631 79.6
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.6e-165 587.0 674 58.6
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.9e-155 553.5 630 61.1
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.1e-153 546.2 697 56.4
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 4.6e-149 532.3 702 54.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 8.4e-143 511.5 813 48.8
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 6.9e-137 491.9 610 58.7
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 7.6e-136 488.4 617 58.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 7.6e-112 408.7 242 93.4
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 2.2e-111 407.1 612 52.3
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-108 397.9 603 52.1
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 7.4e-99 365.5 613 49.1
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 9.7e-99 365.2 626 49.7
C03p60050 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-96 356.3 462 54.8
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.2e-94 349.0 611 48.3
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 5.7e-75 286.2 288 64.9
BcaC04g18830 Brassica carinata HOM05D004299 ORTHO05D032718 3.4e-51 207.2 402 45.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.4e-49 201.8 182 68.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-47 194.5 169 69.2
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.3e-47 194.5 169 69.2
BolC9t58840H Brassica oleracea HOM05D004299 ORTHO05D032718 5.1e-39 166.8 249 52.6
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 6.6e-39 166.4 638 33.9
C09p60050 Brassica napus HOM05D004299 ORTHO05D032718 2.5e-38 164.5 244 52.9
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.1e-37 161.4 625 32.6
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.4e-35 154.1 614 35.7
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 4.4e-35 153.7 651 31.6
C03p09510 Brassica napus HOM05D004299 ORTHO05D024603 9.2e-33 146.0 85 97.6
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 4.7e-29 133.7 465 36.3
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 8.1e-29 132.9 597 31.7
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 8.1e-29 132.9 597 31.7
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 6.8e-28 129.8 599 33.4
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-25 121.3 384 35.9
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-25 121.3 384 35.9
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 9.3e-25 119.4 236 42.8
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 3.9e-23 114.0 612 30.6
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.1e-22 112.5 574 30.8
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 2.5e-22 111.3 313 36.1
A10p22240 Brassica napus HOM05D004299 ORTHO05D003557 2.8e-21 107.8 103 68.0
BraA10t44283Z Brassica rapa HOM05D004299 ORTHO05D003557 2.8e-21 107.8 103 68.0
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.1e-20 105.9 258 36.0
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.4e-20 105.5 322 33.5
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 4.0e-20 104.0 221 38.5
A10p22260 Brassica napus HOM05D004299 ORTHO05D024603 4.4e-19 100.5 87 70.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 7.6e-19 99.8 636 27.8
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 8.4e-18 96.3 277 36.1
BraA10t44285Z Brassica rapa HOM05D004299 ORTHO05D024603 1.4e-17 95.5 87 67.8
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 5.4e-17 93.6 592 29.7
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 5.4e-17 93.6 524 29.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.4e-17 93.6 276 35.5
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 7.8e-16 89.7 199 35.7
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.7e-15 88.6 293 31.1
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.9e-15 87.4 273 34.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 6.6e-15 86.7 125 45.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 6.6e-15 86.7 625 29.3
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-14 85.9 273 34.4
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.3e-13 82.4 627 29.7
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.1e-13 81.6 519 29.5
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.8e-13 81.3 198 33.3
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 8.1e-13 79.7 141 42.6
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.4e-12 79.0 294 31.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.4e-12 78.2 688 26.9
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.4e-12 78.2 359 29.2
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 2.4e-12 78.2 210 35.2
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.4e-12 78.2 270 29.6
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 3.1e-12 77.8 281 31.3
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 4.0e-12 77.4 696 26.9
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.3e-12 77.0 446 29.6
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 6.9e-12 76.6 159 39.6
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.9e-12 76.6 359 30.4
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.5e-11 75.5 239 32.6
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.0e-11 75.1 310 30.0
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.4e-11 74.3 296 31.8
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 9.9e-11 72.8 319 30.1
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 1.3e-10 72.4 394 29.4
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.3e-10 72.4 478 27.6
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 2.2e-10 71.6 369 32.0
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.8e-10 70.9 415 29.2
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 4.9e-10 70.5 210 33.8
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.1e-09 69.3 477 27.9
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.9e-09 68.6 70 52.9
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.9e-09 68.6 666 27.6
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 3.2e-09 67.8 663 26.8
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.2e-09 67.8 507 27.8
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 4.2e-09 67.4 254 31.5
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 4.2e-09 67.4 641 26.8
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 9.3e-09 66.2 522 26.6
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.2e-08 65.9 39 79.5
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.6e-08 65.5 64 57.8
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 3.5e-08 64.3 619 26.7
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.5e-08 64.3 430 28.4
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 6.0e-08 63.5 86 46.5
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.9e-08 63.2 308 28.6
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.3e-07 62.4 576 26.6
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.9e-07 60.8 714 25.2
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 6.7e-07 60.1 697 25.8
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.1e-06 59.3 385 26.8
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.5e-06 58.9 336 30.1
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 3.3e-06 57.8 37 70.3
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 3.3e-06 57.8 37 70.3
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 4.3e-06 57.4 457 28.2
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 4.3e-06 57.4 136 36.8
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 5.6e-06 57.0 469 26.9
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 5.6e-06 57.0 455 29.0
C09p60080 Brassica napus HOM05D004299 ORTHO05D024603 7.4e-06 56.6 51 70.6
BolC9t58843H Brassica oleracea HOM05D004299 ORTHO05D024603 7.4e-06 56.6 51 70.6
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 7.4e-06 56.6 282 28.7


User provided reference genes

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