Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1363.2 695 100.0
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1312.4 696 97.1
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1211.1 697 90.0
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1211.1 697 90.0
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1208.4 696 89.2
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1147.9 655 91.5
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1093.6 708 79.9
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 9.5e-311 1069.7 721 77.5
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 6.6e-304 1047.0 727 75.8
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.0e-301 1037.7 727 76.3
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 2.7e-297 1025.0 728 74.9
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.3e-296 1022.7 727 75.1
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.2e-294 1016.1 727 74.0
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 6.8e-293 1010.4 727 74.4
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 7.1e-290 1000.3 727 72.9
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 7.1e-290 1000.3 727 72.9
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 4.6e-289 997.7 727 72.6
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 4.6e-289 997.7 727 72.6
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 6.0e-289 997.3 726 72.6
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 6.0e-289 997.3 726 72.6
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 3.6e-286 988.0 726 72.5
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 8.9e-285 983.4 726 72.3
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 8.9e-285 983.4 726 72.3
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 4.9e-283 977.6 752 69.8
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 3.0e-272 941.8 723 69.2
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 2.5e-263 912.1 672 72.8
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 2.0e-252 875.9 730 63.3
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 3.4e-252 875.2 724 62.7
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.7e-251 872.8 727 63.3
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 8.4e-251 870.5 728 63.5
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 2.5e-250 869.0 747 62.5
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 3.2e-250 868.6 724 63.0
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 3.2e-250 868.6 724 63.1
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.2e-249 866.7 728 63.0
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 4.6e-249 864.8 730 62.3
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 7.9e-249 864.0 726 62.8
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 7.9e-249 864.0 730 61.9
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.3e-248 863.2 730 62.1
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 5.1e-248 861.3 729 61.9
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.1e-247 860.1 730 61.5
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 4.3e-247 858.2 730 62.2
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.3e-246 856.7 724 61.9
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.6e-246 856.3 727 62.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 2.8e-246 855.5 730 61.5
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 3.7e-246 855.1 723 61.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 4.8e-246 854.7 727 62.3
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.1e-245 853.6 724 61.6
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.1e-245 853.6 725 62.9
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.1e-245 853.6 725 62.6
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.0e-244 849.4 725 62.6
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.0e-243 847.0 727 61.1
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.9e-243 845.5 536 80.8
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 3.8e-243 845.1 730 61.0
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 3.5e-241 838.6 724 61.3
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 4.6e-241 838.2 724 59.9
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.3e-240 836.6 733 60.4
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 1.1e-239 833.6 730 60.5
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 4.3e-239 831.6 730 59.7
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.3e-238 830.1 724 60.2
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 2.2e-238 829.3 717 61.2
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 8.2e-238 827.4 725 60.7
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 1.1e-237 827.0 728 60.3
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 4.1e-237 825.1 729 59.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 9.0e-237 823.9 728 59.9
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 1.2e-236 823.5 724 59.5
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.0e-236 822.8 740 59.1
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 2.0e-236 822.8 728 59.9
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 4.5e-236 821.6 727 60.9
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 5.9e-236 821.2 758 58.7
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.3e-235 820.1 728 59.6
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.3e-235 820.1 740 58.9
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 3.8e-235 818.5 725 59.4
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 5.0e-235 818.1 727 60.2
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.5e-234 815.8 727 60.0
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 7.2e-234 814.3 728 59.2
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 4.6e-233 811.6 727 58.6
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 8.8e-232 807.4 724 58.1
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.0e-231 806.2 729 58.8
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.0e-231 806.2 727 58.5
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 6.3e-230 801.2 727 58.0
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.4e-229 800.0 729 57.8
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 3.1e-229 798.9 708 59.9
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 9.1e-229 797.3 734 57.6
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 9.1e-229 797.3 708 59.7
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.5e-228 796.6 725 57.8
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 5.9e-228 794.7 725 58.5
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 5.0e-227 791.6 728 57.0
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 4.2e-226 788.5 728 56.7
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.7e-225 785.8 685 60.9
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.6e-225 785.4 720 57.9
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 6.1e-225 784.6 721 57.8
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 7.9e-225 784.3 727 57.1
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.1e-223 780.4 720 57.8
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 2.0e-223 779.6 726 57.2
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.3e-222 776.9 729 57.6
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 3.7e-222 775.4 711 57.8
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 4.1e-221 771.9 725 56.1
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.0e-220 769.6 727 57.4
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 3.8e-219 765.4 723 57.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.4e-216 756.9 724 55.7
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 1.3e-214 750.4 735 55.4
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.2e-207 727.2 637 59.8
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.7e-206 723.4 607 62.6
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.2e-204 717.2 724 53.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 3.8e-203 712.2 658 56.2
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.6e-201 705.7 737 52.8
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 5.2e-200 701.8 732 51.8
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.1e-197 694.1 529 66.0
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 8.6e-195 684.5 702 53.3
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 5.6e-194 681.8 723 51.2
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.2e-193 680.6 794 48.5
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 8.9e-192 674.5 725 52.0
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.4e-189 666.4 534 63.7
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.5e-186 657.1 527 63.4
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.5e-178 630.6 622 56.4
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 8.6e-171 604.7 727 46.5
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 5.1e-163 578.9 721 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 2.5e-162 576.6 713 44.3
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 4.7e-161 572.4 724 43.8
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.6e-159 566.6 716 44.0
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.1e-157 561.2 511 59.7
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.5e-143 514.2 712 41.4
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.2e-121 440.7 584 43.5
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 6.3e-113 412.5 721 38.7
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.2e-111 408.3 357 62.5
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 9.1e-104 382.1 346 57.2
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 2.1e-100 370.9 479 46.3
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 2.2e-97 360.9 354 54.5
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 9.4e-93 345.5 691 33.4
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 8.9e-75 285.8 697 29.3
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.6e-69 266.5 226 58.0
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.0e-58 231.5 829 27.0
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.4e-56 224.6 532 33.3
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 4.2e-40 170.6 233 45.9
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.7e-33 148.7 170 47.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 2.4e-32 144.8 136 58.8
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.7e-31 141.4 125 56.8
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.7e-25 122.1 102 56.9
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.3e-22 111.7 217 34.1
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.0e-19 99.8 77 67.5
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 9.0e-19 99.8 114 47.4
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.0e-14 86.3 186 36.0
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 1.3e-14 85.9 132 43.9
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.3e-14 85.9 86 55.8
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 3.9e-14 84.3 96 42.7
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.9e-13 82.0 65 60.0
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.4e-13 80.1 62 67.7
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.3e-12 79.3 82 53.7
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 8.2e-12 76.6 96 49.0
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 2.6e-10 71.6 87 51.7
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 3.4e-10 71.2 79 51.9
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 7.6e-10 70.1 88 45.5
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 1.3e-09 69.3 67 55.2
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.0e-09 67.4 98 40.8
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 1.6e-07 62.4 115 36.5
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 3.0e-06 58.2 56 58.9


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