Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 1.6e-100 369.4 177 100.0
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 1.6e-100 369.4 177 100.0
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 1.6e-100 369.4 177 100.0
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 3.5e-100 368.2 177 99.4
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 3.5e-100 368.2 177 99.4
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 1.0e-99 366.7 177 98.9
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 8.0e-97 357.1 177 96.6
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 8.8e-96 353.6 177 95.5
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 1.5e-95 352.8 177 96.0
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 2.6e-95 352.1 177 94.9
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 1.4e-93 346.3 177 93.2
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.8e-93 345.9 177 93.8
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 2.4e-93 345.5 177 93.8
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 2.7e-92 342.0 177 91.0
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 3.2e-90 335.1 177 88.7
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 7.5e-87 323.9 168 90.5
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 6.3e-86 320.9 203 77.3
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 7.7e-84 313.9 177 83.1
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.1e-74 283.5 179 72.1
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 3.3e-74 282.0 179 72.6
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.3e-74 281.6 179 72.6
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 4.3e-74 281.6 179 71.5
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 4.3e-74 281.6 178 72.5
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 5.6e-74 281.2 179 72.1
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 5.6e-74 281.2 179 72.1
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 9.5e-74 280.4 179 70.9
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 9.5e-74 280.4 179 71.5
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 1.2e-73 280.0 179 71.5
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 1.2e-73 280.0 179 73.2
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 1.2e-73 280.0 179 72.6
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 1.6e-73 279.6 177 73.4
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 2.1e-73 279.3 179 72.6
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 2.8e-73 278.9 179 72.6
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 2.8e-73 278.9 179 72.1
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 3.6e-73 278.5 179 70.9
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 4.7e-73 278.1 179 72.1
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 6.1e-73 277.7 179 72.6
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 6.1e-73 277.7 179 72.1
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 6.1e-73 277.7 179 72.6
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 6.1e-73 277.7 179 72.1
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 8.0e-73 277.3 179 71.5
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 8.0e-73 277.3 179 72.1
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.0e-72 276.9 179 72.1
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 1.4e-72 276.6 179 71.5
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 1.8e-72 276.2 179 72.1
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.8e-72 276.2 179 71.5
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 2.3e-72 275.8 179 73.2
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 4.0e-72 275.0 179 69.3
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 4.0e-72 275.0 179 70.4
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 4.0e-72 275.0 179 72.1
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 5.2e-72 274.6 179 69.8
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 5.2e-72 274.6 179 69.8
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 6.8e-72 274.2 179 70.4
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 8.9e-72 273.9 179 69.8
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 8.9e-72 273.9 179 71.5
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.5e-71 273.1 179 69.8
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 1.5e-71 273.1 179 69.3
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 2.0e-71 272.7 179 69.8
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 2.6e-71 272.3 179 69.3
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 3.4e-71 271.9 179 70.4
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 5.8e-71 271.2 179 69.3
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 5.8e-71 271.2 179 69.3
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 7.5e-71 270.8 179 70.4
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 7.5e-71 270.8 179 68.7
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 1.3e-70 270.0 179 70.9
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 1.7e-70 269.6 185 68.6
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 2.2e-70 269.2 179 70.4
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 4.9e-70 268.1 190 67.9
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 4.9e-70 268.1 179 70.9
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 4.9e-70 268.1 179 69.8
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 6.4e-70 267.7 179 70.4
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 6.4e-70 267.7 179 68.7
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 6.4e-70 267.7 179 68.7
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 6.4e-70 267.7 179 67.6
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 8.3e-70 267.3 179 69.3
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 1.1e-69 266.9 191 65.4
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 1.1e-69 266.9 179 70.9
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 1.4e-69 266.5 179 67.6
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.9e-69 266.2 179 69.8
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 2.4e-69 265.8 179 69.3
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 3.2e-69 265.4 179 68.2
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 7.0e-69 264.2 179 68.2
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 1.2e-68 263.5 170 71.2
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 1.2e-68 263.5 179 69.3
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 7.8e-68 260.8 219 58.9
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 1.0e-67 260.4 219 58.9
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.0e-67 260.4 179 70.4
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.7e-67 259.6 190 65.3
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 2.5e-66 255.8 223 56.5
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.2e-65 253.4 232 54.7
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 8.0e-65 250.8 179 65.9
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 2.6e-63 245.7 179 64.2
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 3.4e-63 245.4 178 64.0
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 4.4e-63 245.0 179 65.9
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 5.8e-63 244.6 179 63.7
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 7.5e-63 244.2 196 62.2
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 7.1e-61 237.7 152 71.7
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 7.8e-60 234.2 152 71.1
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 1.0e-59 233.8 179 63.1
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 2.5e-58 229.2 151 70.2
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 2.5e-58 229.2 152 70.4
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 3.6e-57 225.3 151 68.9
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 2.9e-54 215.7 179 58.7
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 6.4e-54 214.5 179 59.8
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 1.4e-53 213.4 154 64.9
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 2.7e-52 209.1 188 56.9
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 3.0e-51 205.7 143 67.8
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 4.3e-50 201.8 135 68.9
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 2.1e-49 199.5 137 67.2
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 7.1e-45 184.5 150 60.0
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 6.0e-36 154.8 99 74.7
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 6.0e-36 154.8 102 72.5
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 9.6e-34 147.5 99 69.7
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 9.0e-32 141.0 99 68.7
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 9.9e-31 137.5 144 44.4
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.2e-30 136.3 135 54.1
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 1.8e-27 126.7 167 38.9
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 2.5e-26 122.9 99 63.6
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 5.0e-14 82.0 136 36.8
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 7.2e-13 78.2 107 46.7
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 1.6e-09 67.0 126 31.0
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 2.8e-09 66.2 101 33.7
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 8.2e-09 64.7 100 33.0
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 8.2e-09 64.7 39 66.7
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 1.8e-08 63.5 100 32.0
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 4.1e-08 62.4 114 31.6
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 6.9e-08 61.6 101 31.7
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 6.9e-08 61.6 95 31.6
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 9.0e-08 61.2 102 30.4
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 9.0e-08 61.2 95 33.7
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 1.2e-07 60.8 101 31.7
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 1.2e-07 60.8 64 51.6
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 1.5e-07 60.5 101 30.7
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 1.5e-07 60.5 101 31.7
SHI26580 Sapria himalayana HOM05D004980 ORTHO05D006505 1.5e-07 60.5 127 30.7
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 2.0e-07 60.1 86 41.9
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 2.0e-07 60.1 121 28.1
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 2.0e-07 60.1 105 32.4
AT5G55130 Arabidopsis thaliana HOM05D004980 ORTHO05D006505 2.6e-07 59.7 106 33.0
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 2.6e-07 59.7 118 32.2
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 3.4e-07 59.3 123 29.3
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 4.5e-07 58.9 134 26.1
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 4.5e-07 58.9 102 30.4
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 4.5e-07 58.9 101 32.7
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 4.5e-07 58.9 133 26.3
PGSC0003DMG400028768 Solanum tuberosum HOM05D004980 ORTHO05D006505 4.5e-07 58.9 159 27.7
THA.LOC104817676 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 4.5e-07 58.9 101 31.7
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 1.0e-06 57.8 97 32.0
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.0e-06 57.8 97 32.0
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.0e-06 57.8 97 32.0
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.0e-06 57.8 97 32.0
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 1.0e-06 57.8 101 32.7
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 1.0e-06 57.8 97 32.0
CARHR268470 Cardamine hirsuta HOM05D004980 ORTHO05D006505 1.3e-06 57.4 134 26.1
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 1.3e-06 57.4 127 26.8
PGSC0003DMG400022209 Solanum tuberosum HOM05D004980 ORTHO05D006505 1.3e-06 57.4 98 31.6
C09p45860 Brassica napus HOM05D004980 ORTHO05D006505 2.2e-06 56.6 134 25.4
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 2.2e-06 56.6 123 26.0
Sp6g17070 Schrenkiella parvula HOM05D004980 ORTHO05D006505 2.2e-06 56.6 106 28.3
Solyc07g064850.3 Solanum lycopersicum HOM05D004980 ORTHO05D006505 2.2e-06 56.6 98 31.6
Sopen07g033050 Solanum pennellii HOM05D004980 ORTHO05D006505 2.2e-06 56.6 98 31.6
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 2.2e-06 56.6 99 29.3
A02p09860 Brassica napus HOM05D004980 ORTHO05D006505 2.9e-06 56.2 134 25.4
Cc08_g05680 Coffea canephora HOM05D004980 ORTHO05D006505 3.8e-06 55.8 120 29.2
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 5.0e-06 55.5 29 75.9
MELO3C014186.2 Cucumis melo HOM05D004980 ORTHO05D006505 5.0e-06 55.5 130 25.4
Rhsim06G0222400 Rhododendron simsii HOM05D004980 ORTHO05D006505 5.0e-06 55.5 109 29.4
AUR62020381 Chenopodium quinoa HOM05D004980 ORTHO05D006505 6.5e-06 55.1 98 28.6
BcaC04g20267 Brassica carinata HOM05D004980 ORTHO05D006505 8.5e-06 54.7 134 24.6
A10p12400 Brassica napus HOM05D004980 ORTHO05D006505 8.5e-06 54.7 106 27.4
BolC9t57438H Brassica oleracea HOM05D004980 ORTHO05D006505 8.5e-06 54.7 134 24.6
BraA10t43335Z Brassica rapa HOM05D004980 ORTHO05D006505 8.5e-06 54.7 106 27.4
CBR_g19046 Chara braunii HOM05D004980 ORTHO05D006505 8.5e-06 54.7 122 27.9
PGR083G1712 Punica granatum HOM05D004980 ORTHO05D006505 8.5e-06 54.7 97 30.9


User provided reference genes

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