Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 2.4e-88 328.9 186 100.0
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 7.9e-87 323.9 182 100.0
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.0e-86 323.6 182 99.5
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 1.1e-77 293.5 182 94.5
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 3.8e-73 278.5 186 86.0
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.1e-72 276.9 182 89.6
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 2.7e-71 272.3 186 81.7
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 1.0e-70 270.4 184 81.5
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 3.0e-70 268.9 186 86.6
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 8.7e-70 267.3 186 81.2
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 4.8e-68 261.5 186 78.0
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 4.1e-67 258.5 186 82.3
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 8.5e-65 250.8 188 83.0
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 3.1e-59 232.3 186 78.5
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 3.1e-59 232.3 186 78.5
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 3.1e-59 232.3 186 78.5
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 4.5e-58 228.4 226 61.1
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 9.4e-56 220.7 186 66.1
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 3.9e-54 215.3 186 68.8
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 2.4e-51 206.1 144 78.5
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 6.3e-36 154.8 186 50.0
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 1.4e-35 153.7 186 49.5
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 7.0e-35 151.4 99 76.8
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 9.1e-35 151.0 99 77.8
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.6e-34 150.2 115 66.1
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 1.6e-34 150.2 183 48.6
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 3.5e-34 149.1 188 51.1
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 7.7e-34 147.9 112 67.9
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.0e-33 147.5 127 69.3
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 1.0e-33 147.5 188 49.5
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.3e-33 147.1 186 55.9
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 2.2e-33 146.4 94 78.7
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 2.2e-33 146.4 82 97.6
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 2.2e-33 146.4 99 74.7
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 2.2e-33 146.4 191 50.8
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 2.2e-33 146.4 194 50.0
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 3.8e-33 145.6 185 50.8
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 3.8e-33 145.6 99 75.8
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 5.0e-33 145.2 94 77.7
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 6.5e-33 144.8 181 50.3
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 6.5e-33 144.8 92 78.3
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 6.5e-33 144.8 98 77.6
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 8.5e-33 144.4 97 72.2
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 8.5e-33 144.4 99 72.7
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 8.5e-33 144.4 99 72.7
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 8.5e-33 144.4 93 76.3
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 8.5e-33 144.4 97 74.2
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 1.1e-32 144.1 99 73.7
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 1.1e-32 144.1 186 47.8
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.5e-32 143.7 185 48.6
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 1.9e-32 143.3 99 73.7
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.9e-32 143.3 185 56.2
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 1.9e-32 143.3 185 56.2
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 2.5e-32 142.9 182 50.5
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.5e-32 142.9 191 49.7
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 3.2e-32 142.5 96 75.0
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 4.2e-32 142.1 119 63.9
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 4.2e-32 142.1 184 46.7
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 4.2e-32 142.1 99 71.7
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 5.5e-32 141.7 112 65.2
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 5.5e-32 141.7 97 73.2
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 7.2e-32 141.4 191 51.8
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.2e-31 140.6 112 71.4
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 1.2e-31 140.6 96 71.9
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.6e-31 140.2 97 75.3
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 1.6e-31 140.2 181 48.6
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 1.6e-31 140.2 99 72.7
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 2.1e-31 139.8 95 71.6
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 2.1e-31 139.8 183 50.3
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 2.7e-31 139.4 91 78.0
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 2.7e-31 139.4 91 78.0
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.7e-31 139.4 193 48.2
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 3.6e-31 139.0 95 73.7
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 3.6e-31 139.0 180 48.9
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 6.1e-31 138.3 101 70.3
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 6.1e-31 138.3 92 75.0
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 8.0e-31 137.9 96 74.0
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 1.0e-30 137.5 184 47.8
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 1.4e-30 137.1 94 75.5
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 1.4e-30 137.1 140 54.3
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.3e-30 136.3 97 69.1
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 2.3e-30 136.3 97 69.1
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 5.2e-30 135.2 182 47.8
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 5.2e-30 135.2 96 69.8
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 5.2e-30 135.2 94 72.3
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 2.0e-29 133.3 93 69.9
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 3.4e-29 132.5 93 69.9
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 4.4e-29 132.1 181 45.3
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 5.7e-29 131.7 192 44.8
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 9.8e-29 131.0 93 69.9
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 1.3e-28 130.6 97 71.1
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.7e-28 130.2 95 68.4
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.2e-28 129.8 175 49.7
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 2.8e-28 129.4 190 45.3
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 4.8e-28 128.6 183 50.3
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 4.8e-28 128.6 192 50.5
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 4.8e-28 128.6 95 67.4
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 8.3e-28 127.9 180 46.7
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 1.4e-27 127.1 92 68.5
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 3.1e-27 125.9 92 70.7
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 3.1e-27 125.9 122 55.7
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 4.1e-27 125.6 83 74.7
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 5.4e-27 125.2 206 47.1
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 9.1e-27 124.4 92 68.5
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 4.5e-26 122.1 88 70.5
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 7.7e-26 121.3 88 69.3
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 2.3e-25 119.8 78 73.1
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.9e-24 116.7 77 74.0
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 5.5e-24 115.2 78 71.8
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 8.9e-22 107.8 90 60.0
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 1.2e-21 107.5 90 58.9
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 3.7e-20 102.4 72 70.8
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.1e-19 100.9 86 60.5
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 1.8e-19 100.1 73 68.5
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.4e-19 98.6 84 59.5
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.2e-18 97.4 86 57.0
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 2.0e-18 96.7 113 50.4
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 4.7e-15 85.5 59 72.9
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 4.4e-13 79.0 61 68.9
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 7.5e-13 78.2 105 45.7
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 2.9e-12 76.3 55 69.1
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.1e-11 74.3 61 67.2
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.4e-11 73.9 85 38.8
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 5.4e-11 72.0 145 35.9
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 6.0e-10 68.6 42 81.0
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 1.7e-09 67.0 133 36.8
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 5.6e-08 62.0 53 54.7
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 7.3e-08 61.6 85 35.3
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 1.2e-07 60.8 52 53.8
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 1.6e-07 60.5 36 75.0
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 5.2e-06 55.5 119 42.0
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 6.8e-06 55.1 170 37.6
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 6.8e-06 55.1 52 53.8


User provided reference genes

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