Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.2e-178 629.8 341 100.0
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 2.0e-157 559.3 340 91.8
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 5.9e-157 557.8 340 91.8
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.2e-154 550.1 333 92.8
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 6.1e-154 547.7 333 93.1
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.0e-153 547.0 329 92.4
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.0e-153 547.0 329 92.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.5e-152 543.1 333 92.5
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 2.7e-149 532.3 347 86.2
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.6e-146 523.1 347 84.7
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 2.3e-145 519.2 347 84.4
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.0e-140 503.8 347 82.7
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.0e-140 503.8 347 82.7
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.7e-140 503.1 347 81.8
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 6.2e-138 494.6 347 81.3
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 4.0e-137 491.9 347 79.3
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 4.0e-137 491.9 347 80.7
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 7.8e-133 477.6 347 78.7
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.7e-124 449.9 346 76.6
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 5.2e-121 438.3 335 74.6
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.8e-97 360.1 336 62.8
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 8.4e-95 351.3 328 62.5
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 6.0e-93 345.1 335 60.0
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 6.0e-93 345.1 340 59.1
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 6.0e-93 345.1 340 59.1
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.3e-92 344.0 348 59.8
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 7.4e-91 338.2 340 58.5
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 9.6e-91 337.8 348 59.2
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 3.7e-90 335.9 337 61.1
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 4.8e-90 335.5 340 60.0
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 4.1e-89 332.4 332 60.5
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.0e-88 330.1 337 59.6
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 3.4e-88 329.3 336 58.3
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.7e-87 327.0 348 57.2
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 2.9e-87 326.2 335 59.4
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.4e-86 323.9 339 59.0
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 2.5e-86 323.2 346 58.1
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.6e-85 320.5 331 57.1
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 3.6e-85 319.3 339 59.3
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 6.1e-85 318.5 343 56.6
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 6.1e-85 318.5 330 58.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 6.1e-85 318.5 350 56.0
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 1.0e-84 317.8 343 56.3
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.0e-84 317.8 342 57.0
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.3e-84 317.4 347 56.5
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.8e-84 317.0 348 57.2
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 3.0e-84 316.2 339 57.2
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 6.7e-84 315.1 349 55.3
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.7e-84 314.7 340 57.9
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.7e-84 314.7 340 57.9
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 8.7e-84 314.7 350 56.9
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 8.7e-84 314.7 339 58.4
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 8.7e-84 314.7 343 57.4
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 8.7e-84 314.7 341 58.7
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 1.1e-83 314.3 347 56.5
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 1.9e-83 313.5 337 57.6
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 3.3e-83 312.8 333 56.2
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 4.3e-83 312.4 341 57.2
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 7.4e-83 311.6 345 56.2
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.6e-82 310.5 346 56.1
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.6e-82 310.5 338 55.6
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.6e-82 310.5 353 56.9
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 4.8e-82 308.9 336 54.2
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 8.2e-82 308.1 329 57.1
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.1e-81 307.8 339 55.2
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 2.4e-81 306.6 335 55.2
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 6.9e-81 305.1 347 55.0
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.6e-80 303.1 350 53.4
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 2.6e-80 303.1 350 54.9
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 4.5e-80 302.4 350 53.1
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 7.7e-80 301.6 342 56.7
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 2.2e-79 300.1 325 52.6
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 8.5e-79 298.1 418 48.6
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.4e-78 297.4 350 54.0
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.9e-78 297.0 332 56.6
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.9e-78 297.0 332 56.6
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.9e-78 297.0 340 54.7
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 7.9e-77 291.6 330 56.7
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 7.9e-77 291.6 339 54.9
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.8e-76 290.4 342 54.4
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.5e-75 287.3 347 53.0
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 6.3e-74 282.0 348 53.2
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.4e-73 280.8 340 54.4
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 4.1e-73 279.3 334 53.0
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 4.1e-73 279.3 284 59.9
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.5e-72 277.3 338 53.0
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 1.5e-72 277.3 409 48.4
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 2.6e-72 276.6 352 52.8
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 3.4e-72 276.2 335 52.2
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.7e-71 273.9 327 52.9
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 1.1e-70 271.2 333 52.3
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 2.1e-69 266.9 276 57.6
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 7.0e-65 251.9 230 67.0
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 2.0e-64 250.4 340 49.1
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 5.9e-64 248.8 236 60.2
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.2e-61 241.1 375 43.7
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.3e-58 231.1 324 49.4
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 2.4e-57 226.9 346 44.5
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.6e-53 213.0 333 47.7
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.2e-51 208.0 329 45.9
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 7.5e-51 205.3 217 56.2
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.0e-47 194.9 235 52.3
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 8.5e-47 191.8 307 44.0
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 5.7e-43 179.1 173 61.3
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 3.7e-42 176.4 99 90.9
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.1e-41 174.9 179 58.7
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 5.4e-41 172.6 317 41.0
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.8e-37 160.2 217 49.3
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 6.1e-37 159.1 235 46.4
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 5.2e-36 156.0 237 45.1
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.2e-35 154.8 104 80.8
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 3.4e-35 153.3 189 50.8
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 5.7e-35 152.5 124 67.7
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 1.3e-34 151.4 130 66.2
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.6e-29 134.4 115 65.2
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 1.6e-29 134.4 162 54.3
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 6.4e-26 122.5 265 34.0
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 2.0e-24 117.5 368 31.0
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.3e-23 114.8 249 35.3
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 2.1e-21 107.5 229 39.3
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 3.6e-21 106.7 129 61.2
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 2.3e-20 104.0 86 64.0
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 2.3e-15 87.4 78 61.5
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 5.1e-15 86.3 87 62.1
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 3.6e-13 80.1 360 25.8
BolC3t18733H Brassica oleracea HOM05D005714 ORTHO05D006812 8.1e-13 79.0 45 84.4
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.4e-12 78.2 83 53.0
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 4.0e-12 76.6 228 34.6
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.5e-11 74.7 79 53.2
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 2.9e-10 70.5 88 53.4
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.2e-08 65.1 235 30.6
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.7e-07 61.2 46 71.7


User provided reference genes

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