Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 6.6e-110 401.0 244 100.0
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.0e-86 323.9 244 78.3
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 5.1e-86 321.6 244 79.1
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 4.1e-75 285.4 254 70.1
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.5e-72 276.2 251 66.9
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 9.4e-72 274.2 246 67.5
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 3.6e-71 272.3 234 70.1
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 7.9e-71 271.2 253 67.6
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 7.9e-71 271.2 231 71.9
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 7.9e-71 271.2 231 71.9
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 7.9e-71 271.2 247 66.8
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 2.3e-70 269.6 235 69.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 3.0e-70 269.2 201 78.6
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.5e-69 266.9 235 69.4
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 2.8e-68 262.7 255 65.9
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 3.7e-68 262.3 253 66.4
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 4.8e-68 261.9 244 67.6
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 5.0e-65 251.9 254 63.8
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 5.0e-65 251.9 254 63.8
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 5.0e-65 251.9 254 63.8
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 7.4e-61 238.0 256 62.1
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 4.1e-59 232.3 204 71.6
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 1.6e-55 220.3 197 66.5
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 2.9e-49 199.5 197 63.5
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 6.8e-46 188.3 193 56.5
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 9.8e-45 184.5 190 55.8
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 1.7e-44 183.7 197 55.3
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.8e-44 183.0 188 55.3
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 8.3e-44 181.4 190 56.8
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 1.1e-43 181.0 193 55.4
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 1.1e-43 181.0 190 54.7
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 3.1e-43 179.5 190 54.7
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 5.4e-43 178.7 199 54.3
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 7.0e-43 178.3 196 53.1
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 1.2e-42 177.6 181 57.5
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.6e-42 177.2 201 52.7
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 2.7e-42 176.4 195 56.4
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 4.5e-42 175.6 178 57.9
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.0e-41 174.5 190 55.8
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 2.3e-41 173.3 190 54.2
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 6.6e-41 171.8 208 51.4
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.6e-41 171.4 186 53.2
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 8.6e-41 171.4 194 55.2
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 1.5e-40 170.6 165 59.4
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.9e-40 170.2 196 52.0
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 3.3e-40 169.5 197 52.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.2e-40 169.1 197 49.7
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 5.5e-40 168.7 197 53.3
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 5.5e-40 168.7 197 52.8
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 5.5e-40 168.7 189 56.1
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 4.7e-39 165.6 190 54.7
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 4.7e-39 165.6 158 57.6
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 8.0e-39 164.9 194 53.6
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 8.0e-39 164.9 198 51.5
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 1.0e-38 164.5 194 53.6
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.4e-38 164.1 186 53.8
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.8e-38 163.7 192 52.6
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 2.3e-38 163.3 155 60.6
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 2.3e-38 163.3 183 55.7
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 4.0e-38 162.5 194 50.5
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 6.8e-38 161.8 181 52.5
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 8.9e-38 161.4 190 51.1
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 8.9e-38 161.4 186 53.8
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.0e-37 160.2 190 50.5
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 2.6e-37 159.8 181 53.0
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 3.4e-37 159.5 175 53.7
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 4.4e-37 159.1 171 51.5
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 7.5e-37 158.3 207 45.4
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 9.8e-37 157.9 168 53.0
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 9.8e-37 157.9 193 50.3
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.3e-36 157.5 190 49.5
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 1.7e-36 157.1 200 50.5
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 1.7e-36 157.1 195 49.2
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.7e-36 157.1 171 52.0
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.8e-36 156.4 162 53.7
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 2.8e-36 156.4 175 51.4
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 3.7e-36 156.0 186 50.5
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 3.7e-36 156.0 220 45.9
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 4.9e-36 155.6 167 53.3
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.1e-35 154.5 164 56.1
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 1.4e-35 154.1 194 50.5
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.4e-35 154.1 190 49.5
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.4e-35 154.1 171 53.8
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 7.0e-35 151.8 167 52.7
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 2.7e-34 149.8 179 52.0
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 3.5e-34 149.4 190 48.9
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 4.5e-34 149.1 193 47.2
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 5.9e-34 148.7 188 47.9
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 7.8e-34 148.3 245 43.7
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 7.8e-34 148.3 168 53.6
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 7.8e-34 148.3 162 54.9
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.0e-33 147.9 196 45.9
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 1.0e-33 147.9 166 53.0
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 1.3e-33 147.5 179 50.8
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 1.3e-33 147.5 175 51.4
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.3e-33 146.7 123 73.2
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 6.6e-33 145.2 188 46.8
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.9e-32 143.7 190 49.5
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 1.9e-32 143.7 203 47.8
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 3.3e-32 142.9 146 54.8
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.3e-32 142.5 124 71.0
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 4.3e-32 142.5 174 50.0
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 4.3e-32 142.5 171 50.3
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 7.3e-32 141.7 164 48.8
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 3.6e-31 139.4 174 52.3
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 8.0e-31 138.3 152 56.6
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 1.4e-30 137.5 175 48.6
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 2.3e-30 136.7 212 42.5
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 3.1e-30 136.3 172 50.6
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 6.8e-30 135.2 147 50.3
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 2.6e-29 133.3 185 47.0
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 3.4e-29 132.9 147 55.8
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 4.4e-29 132.5 143 55.9
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 4.4e-29 132.5 183 48.1
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 4.9e-28 129.0 174 46.6
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 6.4e-28 128.6 160 52.5
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 6.4e-28 128.6 175 48.0
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 1.2e-26 124.4 175 46.3
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.6e-26 124.0 124 65.3
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 6.0e-26 122.1 202 39.1
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 7.8e-26 121.7 192 43.8
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.0e-25 121.3 145 54.5
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.0e-25 121.3 160 50.0
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 3.9e-25 119.4 152 50.7
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 3.9e-25 119.4 143 52.4
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.1e-24 117.9 105 63.8
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.1e-22 111.3 120 55.8
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 2.3e-22 110.2 140 46.4
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.3e-22 110.2 132 51.5
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 2.0e-21 107.1 118 55.1
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 2.6e-21 106.7 182 39.6
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 2.2e-20 103.6 185 38.4
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.9e-19 100.5 172 37.2
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.4e-19 100.1 85 74.1
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 6.0e-18 95.5 125 44.8
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 2.3e-17 93.6 145 40.0
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 6.8e-14 82.0 151 34.4
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 2.0e-13 80.5 225 33.3
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 2.0e-13 80.5 98 50.0
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 1.7e-12 77.4 110 44.5
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 2.9e-12 76.6 81 59.3
CARHR196670 Cardamine hirsuta HOM05D004935 ORTHO05D005676 4.9e-12 75.9 55 69.1
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 6.4e-12 75.5 86 52.3
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.4e-11 74.3 71 56.3
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.9e-11 73.9 73 52.1
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 3.2e-11 73.2 151 33.1
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 1.1e-06 58.2 72 43.1


User provided reference genes

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