Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04969 Brassica carinata HOM05D001124 ORTHO05D093634 4.9e-35 150.6 76 100.0
BcaB01g06371 Brassica carinata HOM05D001124 ORTHO05D001004 1.5e-15 85.9 43 95.3
Sp6g29530 Schrenkiella parvula HOM05D001124 ORTHO05D001004 3.6e-14 81.3 43 88.4
A03p06630 Brassica napus HOM05D001124 ORTHO05D001004 4.7e-14 80.9 43 90.7
C03p07660 Brassica napus HOM05D001124 ORTHO05D001004 6.2e-14 80.5 43 88.4
BolC3t13266H Brassica oleracea HOM05D001124 ORTHO05D001004 6.2e-14 80.5 43 88.4
BraA03t09996Z Brassica rapa HOM05D001124 ORTHO05D001004 6.2e-14 80.5 43 88.4
AT5G14480 Arabidopsis thaliana HOM05D001124 ORTHO05D001004 2.4e-13 78.6 43 86.0
Carub.0006s1266 Capsella rubella HOM05D001124 ORTHO05D001004 2.4e-13 78.6 43 86.0
CARHR198830 Cardamine hirsuta HOM05D001124 ORTHO05D001004 3.1e-13 78.2 43 83.7
BcaB08g36994 Brassica carinata HOM05D001124 ORTHO05D001004 4.0e-13 77.8 43 81.4
AL6G25210 Arabidopsis lyrata HOM05D001124 ORTHO05D001004 8.9e-13 76.6 43 83.7
A10p24080 Brassica napus HOM05D001124 ORTHO05D001004 8.9e-13 76.6 43 76.7
BcaC04g19031 Brassica carinata HOM05D001124 ORTHO05D001004 1.2e-12 76.3 43 76.7
C09p62700 Brassica napus HOM05D001124 ORTHO05D001004 1.2e-12 76.3 43 76.7
BolC9t59107H Brassica oleracea HOM05D001124 ORTHO05D001004 1.2e-12 76.3 43 76.7
Thhalv10013782m.g Eutrema salsugineum HOM05D001124 ORTHO05D001004 1.2e-12 76.3 43 83.7
BraA10t44471Z Brassica rapa HOM05D001124 ORTHO05D001004 4.4e-12 74.3 43 74.4
Aa31LG11G15250 Aethionema arabicum HOM05D001124 ORTHO05D001004 2.9e-11 71.6 43 79.1
BcaC03g13486 Brassica carinata HOM05D001124 ORTHO05D001004 1.9e-10 68.9 43 72.1
A02p02520 Brassica napus HOM05D001124 ORTHO05D001004 1.9e-10 68.9 43 72.1
C02p06760 Brassica napus HOM05D001124 ORTHO05D001004 1.9e-10 68.9 43 72.1
BraA02t05221Z Brassica rapa HOM05D001124 ORTHO05D001004 1.9e-10 68.9 43 72.1
BcaNung03154 Brassica carinata HOM05D001124 ORTHO05D001004 4.1e-10 67.8 43 69.8
BolC2t06623H Brassica oleracea HOM05D001124 ORTHO05D001004 7.1e-10 67.0 43 69.8
BolC2t06635H Brassica oleracea HOM05D001124 ORTHO05D107212 7.1e-10 67.0 43 69.8
AT3G01620 Arabidopsis thaliana HOM05D001124 ORTHO05D001004 1.6e-09 65.9 43 62.8
C02p06890 Brassica napus HOM05D001124 ORTHO05D001004 1.6e-09 65.9 43 69.8
C02p07010 Brassica napus HOM05D001124 ORTHO05D001004 1.6e-09 65.9 43 69.8
BolC2t06632H Brassica oleracea HOM05D001124 ORTHO05D001004 1.6e-09 65.9 43 69.8
Thhalv10020899m.g Eutrema salsugineum HOM05D001124 ORTHO05D001004 2.1e-09 65.5 43 62.8
AL3G10530 Arabidopsis lyrata HOM05D001124 ORTHO05D001004 3.5e-09 64.7 43 60.5
THA.LOC104821093 Tarenaya hassleriana HOM05D001124 ORTHO05D001004 3.5e-09 64.7 42 69.0
CARHR075300 Cardamine hirsuta HOM05D001124 ORTHO05D001004 7.8e-09 63.5 44 65.9
Aa31LG5G10770 Aethionema arabicum HOM05D001124 ORTHO05D001004 2.3e-08 62.0 45 57.8
FAN02G1601 Fragaria x ananassa HOM05D001124 ORTHO05D001004 5.1e-08 60.8 43 60.5
FvH4_6g51700 Fragaria vesca HOM05D001124 ORTHO05D001004 6.6e-08 60.5 43 60.5
FAN05G4837 Fragaria x ananassa HOM05D001124 ORTHO05D001004 6.6e-08 60.5 43 60.5
FAN09G3179 Fragaria x ananassa HOM05D001124 ORTHO05D001004 6.6e-08 60.5 43 60.5
FAN14G4198 Fragaria x ananassa HOM05D001124 ORTHO05D001004 6.6e-08 60.5 43 60.5
Potri.001G343600 Populus trichocarpa HOM05D001124 ORTHO05D001004 6.6e-08 60.5 41 65.9
RcHm_v2.0_Chr2g0173231 Rosa chinensis HOM05D001124 ORTHO05D001004 1.5e-07 59.3 43 60.5
Cfa007341 Carpinus fangiana HOM05D001124 ORTHO05D001004 1.9e-07 58.9 42 59.5
Prupe.3G293400 Prunus persica HOM05D001124 ORTHO05D001004 2.5e-07 58.5 42 57.1
Rhsim12G0109700 Rhododendron simsii HOM05D001124 ORTHO05D001004 2.5e-07 58.5 36 66.7
Thecc.04G019200 Theobroma cacao HOM05D001124 ORTHO05D001004 2.5e-07 58.5 41 56.1
MD17G1022900 Malus domestica HOM05D001124 ORTHO05D001004 3.3e-07 58.2 42 57.1
PGR083G0909 Punica granatum HOM05D001124 ORTHO05D001004 3.3e-07 58.2 42 59.5
Actinidia35778 Actinidia chinensis HOM05D001124 ORTHO05D001004 5.6e-07 57.4 42 54.8
Sabra16G0222900 Salix brachista HOM05D001124 ORTHO05D001004 5.6e-07 57.4 40 65.0
Atru.chr6.2422 Acer truncatum HOM05D001124 ORTHO05D001004 1.2e-06 56.2 41 53.7
Aqoxy3G01236 Aquilegia oxysepala HOM05D001124 ORTHO05D001004 1.2e-06 56.2 41 61.0
AT3G27540 Arabidopsis thaliana HOM05D001124 ORTHO05D001004 1.2e-06 56.2 42 54.8
Glyma.19G056500 Glycine max HOM05D001124 ORTHO05D001004 1.2e-06 56.2 43 55.8
Manes.17G111300 Manihot esculenta HOM05D001124 ORTHO05D001004 1.2e-06 56.2 41 56.1
CARHR148910 Cardamine hirsuta HOM05D001124 ORTHO05D001004 1.6e-06 55.8 42 54.8
Ca_17775_v3 Cicer arietinum L. HOM05D001124 ORTHO05D001004 1.6e-06 55.8 49 46.9
Duzib264G0446 Durio zibethinus HOM05D001124 ORTHO05D001004 1.6e-06 55.8 41 56.1
Lalb_Chr14g0362851 Lupinus albus HOM05D001124 ORTHO05D001004 1.6e-06 55.8 42 57.1
CiPaw.03G045300 Carya illinoinensis HOM05D001124 ORTHO05D001004 2.1e-06 55.5 42 59.5
Medtr7g033325 Medicago truncatula HOM05D001124 ORTHO05D001004 2.1e-06 55.5 42 57.1
TWI56G0233 Tripterygium wilfordii HOM05D001124 ORTHO05D001004 2.1e-06 55.5 41 58.5
vmacro18293 Vaccinium macrocarpon HOM05D001124 ORTHO05D001004 2.1e-06 55.5 40 57.5
GSVIVG01032386001 Vitis vinifera HOM05D001124 ORTHO05D001004 2.1e-06 55.5 41 58.5
MD09G1023400 Malus domestica HOM05D001124 ORTHO05D001004 2.8e-06 55.1 42 52.4
TWI12G1330 Tripterygium wilfordii HOM05D001124 ORTHO05D001004 2.8e-06 55.1 41 56.1
COL.COLO4_29170 Corchorus olitorius HOM05D001124 ORTHO05D001004 3.6e-06 54.7 41 56.1
Gohir.A09G030000 Gossypium hirsutum HOM05D001124 ORTHO05D001004 3.6e-06 54.7 42 57.1
Gohir.D09G029700 Gossypium hirsutum HOM05D001124 ORTHO05D001004 3.6e-06 54.7 42 57.1
Gorai.006G034700 Gossypium raimondii HOM05D001124 ORTHO05D001004 3.6e-06 54.7 42 57.1
TAR374G0164 Trochodendron aralioides HOM05D001124 ORTHO05D001004 3.6e-06 54.7 43 51.2
Aqoxy5G03746 Aquilegia oxysepala HOM05D001124 ORTHO05D001004 4.7e-06 54.3 41 58.5
Psat7g058120 Pisum sativum HOM05D001124 ORTHO05D001004 4.7e-06 54.3 41 53.7
TAR622G0165 Trochodendron aralioides HOM05D001124 ORTHO05D001004 4.7e-06 54.3 40 62.5
arahy.Tifrunner.gnm1.ann1.MBL6KM Arachis hypogaea HOM05D001124 ORTHO05D001004 6.2e-06 53.9 41 51.2
arahy.Tifrunner.gnm1.ann1.ZANX40 Arachis hypogaea HOM05D001124 ORTHO05D001004 6.2e-06 53.9 41 51.2
Carub.0003s0044 Capsella rubella HOM05D001124 ORTHO05D001004 6.2e-06 53.9 43 53.5
Carub.0005s0597 Capsella rubella HOM05D001124 ORTHO05D001004 6.2e-06 53.9 42 52.4
Lsat_1_v5_gn_4_4041 Lactuca sativa HOM05D001124 ORTHO05D001004 6.2e-06 53.9 43 55.8
Nitab4.5_0001854g0010 Nicotiana tabacum HOM05D001124 ORTHO05D001004 6.2e-06 53.9 44 47.7
Rhsim08G0048400 Rhododendron simsii HOM05D001124 ORTHO05D001004 6.2e-06 53.9 41 51.2
FAN14G5112 Fragaria x ananassa HOM05D001124 ORTHO05D001004 8.1e-06 53.5 34 64.7
Lj4g0026182 Lotus japonicus HOM05D001124 ORTHO05D001004 8.1e-06 53.5 41 51.2
MBI06_g00027_MAGBIO Magnolia biondii HOM05D001124 ORTHO05D001004 8.1e-06 53.5 43 51.2
TAR371G0794 Trochodendron aralioides HOM05D001124 ORTHO05D001004 8.1e-06 53.5 43 51.2


User provided reference genes

Program Settings