Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 9.7e-119 430.3 231 100.0
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 2.6e-95 352.4 232 83.6
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 5.2e-88 328.2 187 86.6
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 5.2e-88 328.2 187 86.6
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-85 318.2 184 82.6
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-84 317.0 232 80.2
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 3.3e-82 308.9 186 80.1
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 9.8e-79 297.4 234 68.8
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-76 289.7 231 68.8
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 2.0e-76 289.7 231 68.8
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-75 287.3 231 71.9
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-75 287.3 229 66.4
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 6.6e-75 284.6 178 77.0
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 8.6e-75 284.3 230 63.9
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-74 282.7 231 71.0
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 3.3e-74 282.3 231 69.7
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-73 279.6 226 68.6
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-73 279.3 232 67.7
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 2.2e-70 269.6 224 71.0
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 3.7e-70 268.9 231 69.7
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 3.7e-70 268.9 181 73.5
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 6.4e-70 268.1 231 69.7
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 6.4e-70 268.1 231 68.8
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 9.2e-61 237.7 230 57.8
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-60 236.9 191 64.9
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 3.5e-60 235.7 187 65.8
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 7.8e-60 234.6 232 61.6
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 5.6e-58 228.4 163 71.8
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 6.2e-57 224.9 151 72.8
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 5.2e-56 221.9 152 73.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 4.9e-54 215.3 184 63.6
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-53 213.4 184 62.5
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-53 213.4 120 84.2
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 1.7e-43 180.3 161 61.5
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 2.4e-40 169.9 175 52.0
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 3.4e-39 166.0 176 54.0
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.4e-37 159.8 162 50.0
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.1e-37 158.3 154 57.1
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 3.5e-36 156.0 186 49.5
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.6e-36 155.6 162 47.5
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 3.0e-35 152.9 152 52.0
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 6.6e-35 151.8 169 45.6
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-32 144.4 151 48.3
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-32 144.1 151 48.3
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.4e-32 144.1 151 48.3
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-32 143.3 180 43.9
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-32 143.3 123 60.2
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 3.1e-32 142.9 151 47.7
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 9.0e-32 141.4 151 47.7
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.2e-31 141.0 154 48.7
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-31 139.8 181 44.2
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.6e-31 139.8 181 44.2
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 9.9e-31 137.9 151 47.7
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 6.4e-30 135.2 170 44.7
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-29 134.4 228 39.5
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-28 131.0 151 43.0
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.3e-27 126.7 151 43.0
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.7e-27 125.2 159 44.0
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 6.7e-27 125.2 163 41.1
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.7e-27 124.8 174 39.1
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.4e-26 121.7 151 42.4
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.8e-25 119.8 157 41.4
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.1e-25 118.2 151 39.7
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-24 117.9 154 42.2
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-24 117.5 163 39.3
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-24 116.7 175 40.6
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.4e-24 116.7 170 39.4
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.3e-24 115.5 180 39.4
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-23 113.6 181 38.1
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-23 113.6 153 39.2
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 2.0e-23 113.6 168 39.9
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.4e-23 112.8 160 39.4
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.5e-23 112.5 209 38.3
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.4e-22 108.6 168 36.3
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.4e-22 108.2 149 38.9
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.0e-19 101.3 160 39.4
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 2.3e-19 100.1 144 41.7
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-19 99.8 144 41.7
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.7e-19 98.6 193 39.4
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 6.7e-19 98.6 158 39.9
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 8.7e-19 98.2 161 42.9
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-18 97.8 189 40.2
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-18 97.1 161 38.5
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-17 94.4 164 38.4
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-17 94.4 71 62.0
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.3e-17 94.4 160 40.0
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-17 94.0 153 39.2
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-17 94.0 181 35.9
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 2.8e-17 93.2 162 40.1
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 1.8e-16 90.5 186 39.2
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-16 89.7 157 40.8
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-16 89.7 157 40.8
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.0e-16 88.2 143 39.2
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 1.2e-15 87.8 103 47.6
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 1.2e-15 87.8 103 47.6
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 7.6e-15 85.1 185 35.7
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 7.6e-15 85.1 182 35.7
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.7e-14 84.0 161 37.9
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.7e-14 84.0 161 37.9
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.7e-14 84.0 184 39.1
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.9e-14 83.2 176 35.8
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-14 83.2 171 36.8
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.9e-14 83.2 176 35.8
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 4.9e-14 82.4 162 38.9
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 1.1e-13 81.3 190 35.3
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.9e-13 80.5 165 34.5
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.5e-13 80.1 136 38.2
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.2e-13 79.7 161 38.5
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.2e-13 79.7 164 36.6
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 3.2e-13 79.7 152 38.8
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 3.2e-13 79.7 169 34.9
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.2e-13 79.3 161 35.4
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.2e-13 79.3 88 50.0
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 5.5e-13 79.0 164 37.2
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.3e-13 78.2 160 33.8
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 1.2e-12 77.8 164 36.6
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.2e-12 77.8 160 33.8
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.6e-12 77.4 159 34.0
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 2.1e-12 77.0 159 37.1
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 2.1e-12 77.0 159 37.1
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 2.1e-12 77.0 159 37.1
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.7e-12 76.6 191 34.0
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.7e-12 76.6 175 35.4
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 2.7e-12 76.6 159 37.1
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 3.5e-12 76.3 164 36.0
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.6e-12 75.9 164 36.0
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 4.6e-12 75.9 164 36.0
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.6e-12 75.9 84 50.0
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.0e-11 74.7 155 35.5
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.0e-11 74.7 142 37.3
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 1.3e-11 74.3 160 36.9
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.3e-11 74.3 181 32.6
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.3e-11 73.6 155 35.5
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 3.0e-11 73.2 74 54.1
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 6.7e-11 72.0 165 33.9
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.5e-10 70.9 159 36.5
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.9e-10 70.5 153 32.0
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 1.9e-10 70.5 141 37.6
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 3.3e-10 69.7 160 33.8
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-09 67.4 164 35.4
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.8e-09 66.6 183 33.9
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.7e-09 66.2 167 31.7
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.8e-09 65.9 73 43.8
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 6.3e-09 65.5 167 31.1
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.2e-09 65.1 69 43.5
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.1e-08 63.2 167 31.7
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 4.1e-08 62.8 167 32.3
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 5.3e-08 62.4 175 33.7
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 6.9e-08 62.0 189 31.7
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.2e-07 61.2 174 29.9
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 5.9e-07 58.9 161 31.1
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.7e-07 58.5 160 35.0
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.8e-06 56.2 191 29.3


User provided reference genes

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