Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 6.0e-121 437.6 229 100.0
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 3.7e-78 295.4 237 72.6
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-77 292.7 231 68.4
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 8.5e-75 284.3 229 69.4
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-72 277.3 187 74.3
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 3.8e-67 258.8 231 64.1
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 5.0e-67 258.5 231 68.0
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 6.5e-67 258.1 230 63.5
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-66 257.3 233 65.7
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-66 256.1 181 70.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 5.5e-66 255.0 231 67.5
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 7.2e-66 254.6 231 63.2
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 9.4e-66 254.2 231 64.1
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-65 252.3 231 65.4
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 4.7e-65 251.9 231 65.8
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 8.0e-65 251.1 234 62.4
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.0e-64 250.8 230 58.7
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 3.0e-64 249.2 231 57.6
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-63 246.9 229 58.1
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 7.5e-63 244.6 229 59.4
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-62 242.7 234 61.5
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-62 241.5 234 63.7
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 8.3e-62 241.1 188 65.4
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 8.3e-62 241.1 188 65.4
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 5.3e-61 238.4 232 61.6
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 5.5e-58 228.4 233 62.2
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.2e-57 227.3 189 62.4
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 8.0e-57 224.6 229 58.5
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 8.0e-57 224.6 227 60.8
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-56 222.6 227 58.6
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-50 203.4 168 62.5
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 8.0e-49 198.0 169 64.5
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-48 197.6 229 52.8
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-47 192.6 152 63.2
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 2.4e-45 186.4 236 50.4
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 1.2e-44 184.1 180 66.7
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 5.6e-42 175.3 176 57.4
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.3e-38 164.1 163 55.2
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.7e-38 163.7 163 54.6
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.9e-38 162.9 157 58.0
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 8.3e-38 161.4 183 59.6
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 3.2e-37 159.5 155 56.1
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 4.6e-36 155.6 178 50.6
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 2.3e-32 143.3 177 48.0
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-32 142.9 152 52.6
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 3.7e-30 136.0 176 47.7
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 3.7e-30 136.0 176 47.7
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-29 134.4 152 51.3
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 1.1e-29 134.4 153 50.3
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 2.4e-29 133.3 152 50.0
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 2.4e-29 133.3 152 50.0
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 4.1e-29 132.5 152 50.0
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 7.1e-29 131.7 152 50.7
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 1.6e-28 130.6 152 49.3
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.7e-27 127.1 150 49.3
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.9e-27 125.9 150 44.7
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.9e-27 125.9 175 41.1
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.5e-26 123.2 176 44.3
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 2.5e-26 123.2 100 65.0
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 2.5e-26 123.2 100 65.0
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 4.3e-26 122.5 232 36.2
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.3e-26 122.5 157 42.7
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.8e-25 119.8 150 42.0
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 4.7e-25 119.0 159 42.8
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 1.8e-24 117.1 161 41.0
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.8e-24 115.2 177 40.7
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 8.9e-24 114.8 174 42.5
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-23 114.0 150 40.7
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-23 114.0 151 39.7
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.4e-23 112.5 153 42.5
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.8e-23 112.1 157 45.9
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.7e-22 110.5 151 45.7
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.2e-22 110.2 188 37.8
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.1e-21 107.8 185 40.0
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-21 107.8 187 40.1
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.9e-21 107.1 165 37.6
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 9.2e-21 104.8 148 45.3
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.6e-20 104.0 188 35.6
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-20 104.0 187 37.4
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 3.5e-20 102.8 148 44.6
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.6e-20 102.4 150 39.3
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-20 102.4 155 41.9
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 4.6e-20 102.4 160 40.6
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 7.8e-20 101.7 166 39.8
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.3e-19 100.1 153 41.8
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 6.6e-19 98.6 158 41.1
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 6.6e-19 98.6 167 36.5
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-18 97.1 169 39.1
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.3e-18 95.9 148 37.2
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.3e-18 95.1 139 37.4
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 7.3e-18 95.1 188 34.0
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-16 90.5 124 53.2
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-16 89.7 158 36.7
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.0e-16 89.4 160 34.4
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 6.8e-16 88.6 184 38.6
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 9.9e-15 84.7 135 40.7
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 9.9e-15 84.7 135 40.7
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 9.9e-15 84.7 135 40.7
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.3e-14 84.3 157 38.2
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 1.7e-14 84.0 135 40.7
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 2.2e-14 83.6 184 35.3
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.2e-14 83.6 184 35.9
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 2.9e-14 83.2 165 37.0
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 2.9e-14 83.2 165 36.4
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 2.9e-14 83.2 165 36.4
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.8e-14 82.8 136 36.8
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 3.8e-14 82.8 178 36.0
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 3.8e-14 82.8 188 36.2
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 8.4e-14 81.6 74 54.1
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-13 81.3 154 36.4
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-13 81.3 154 36.4
THA.LOC104809407 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 1.4e-13 80.9 218 34.9
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.4e-13 80.1 177 35.0
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.4e-13 80.1 165 37.0
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.4e-13 80.1 165 37.0
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.2e-13 79.7 182 35.7
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 5.4e-13 79.0 152 36.2
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.2e-12 77.8 157 36.9
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.2e-12 77.8 157 37.6
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 2.1e-12 77.0 164 37.2
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 2.1e-12 77.0 162 37.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.1e-12 77.0 161 34.8
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 2.7e-12 76.6 182 32.4
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 7.8e-12 75.1 154 36.4
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.0e-11 74.7 77 54.5
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 1.3e-11 74.3 164 36.0
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.0e-11 73.2 86 45.3
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.9e-11 72.8 78 41.0
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.1e-11 72.4 156 35.9
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 5.1e-11 72.4 145 37.2
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 5.1e-11 72.4 142 38.7
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 5.1e-11 72.4 157 35.0
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 6.6e-11 72.0 148 36.5
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 8.7e-11 71.6 161 35.4
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-10 71.2 156 35.9
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.1e-10 71.2 179 33.5
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.9e-10 70.5 145 34.5
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.9e-10 70.5 159 33.3
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 1.9e-10 70.5 162 32.7
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 3.3e-10 69.7 188 33.0
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.6e-10 68.9 182 30.2
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.3e-09 67.8 158 31.6
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.6e-09 67.4 157 31.2
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.8e-09 66.6 82 43.9
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 3.6e-09 66.2 158 32.3
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.6e-09 66.2 155 34.2
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 3.6e-09 66.2 159 34.6
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 4.8e-09 65.9 157 33.8
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 8.1e-09 65.1 172 30.8
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.8e-08 63.9 154 34.4
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.1e-08 63.2 153 30.7
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 2.2e-06 57.0 100 36.0


User provided reference genes

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