Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 7.0e-119 430.6 217 100.0
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 2.9e-88 328.9 223 76.7
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 6.6e-85 317.8 190 83.2
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-83 312.0 233 73.4
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-74 283.5 165 83.6
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 6.8e-74 281.2 231 68.4
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-71 272.7 227 67.8
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 6.0e-70 268.1 224 63.4
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 7.8e-70 267.7 227 67.4
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-68 263.8 224 62.5
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 4.0e-66 255.4 229 60.7
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 8.9e-66 254.2 229 61.1
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-65 253.8 227 61.7
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-65 253.4 226 61.5
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-64 250.4 227 60.8
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-64 250.0 224 61.2
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-63 245.4 192 66.1
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-63 245.4 192 66.1
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 9.2e-63 244.2 227 60.4
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-62 241.9 226 58.4
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-61 240.0 226 57.5
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-61 240.0 226 58.0
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-60 237.3 229 58.1
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-58 230.3 230 57.8
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 1.2e-57 227.3 202 60.9
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 7.6e-57 224.6 227 55.9
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 7.6e-57 224.6 229 57.6
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 8.4e-56 221.1 222 55.9
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-55 219.9 222 55.4
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 3.2e-55 219.2 219 55.7
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-51 205.7 151 66.2
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 9.0e-50 201.1 224 53.6
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 5.8e-49 198.4 157 63.1
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-47 194.1 202 57.4
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 1.9e-47 193.4 225 54.2
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-45 186.4 159 66.0
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 6.2e-43 178.3 177 62.1
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.4e-42 177.2 152 61.2
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 5.3e-42 175.3 205 48.3
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.5e-41 173.7 212 48.1
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 2.4e-39 166.4 216 49.1
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.8e-37 160.2 225 48.4
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 8.7e-37 157.9 155 54.2
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 3.3e-36 156.0 215 47.9
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-34 151.0 174 50.0
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 3.1e-34 149.4 209 46.9
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-34 149.1 155 52.3
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.3e-34 148.7 208 44.2
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 5.3e-34 148.7 174 50.0
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 6.9e-34 148.3 174 49.4
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 1.2e-33 147.5 186 47.3
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-33 146.7 205 45.4
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-33 146.4 203 43.8
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.6e-33 146.4 203 43.8
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 7.1e-31 138.3 160 48.1
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.7e-30 136.3 210 40.5
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.0e-29 134.4 157 45.2
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.7e-29 131.3 151 45.7
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.9e-28 130.2 209 42.1
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 1.9e-28 130.2 222 39.2
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.5e-28 129.8 208 37.0
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.7e-28 128.6 215 38.6
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-27 126.7 179 48.0
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 8.2e-27 124.8 220 38.2
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-26 123.2 214 43.0
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.4e-26 123.2 199 43.2
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.1e-26 122.9 200 41.0
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.2e-25 120.9 151 41.7
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-25 120.2 203 38.9
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.6e-25 118.2 200 36.0
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.3e-24 117.5 154 39.6
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.7e-24 117.1 152 42.8
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.7e-24 117.1 158 47.5
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.7e-24 117.1 211 38.9
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.8e-24 115.9 205 38.5
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 8.5e-24 114.8 173 38.7
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 9.3e-23 111.3 163 42.3
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.1e-21 105.5 180 38.9
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-20 104.4 203 35.0
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-20 103.2 173 39.9
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.3e-20 102.8 152 40.1
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 4.3e-20 102.4 159 42.1
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 4.3e-20 102.4 163 39.3
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 5.7e-20 102.1 218 37.6
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 9.7e-20 101.3 173 39.3
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 2.2e-19 100.1 162 41.4
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 4.8e-19 99.0 102 54.9
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 4.8e-19 99.0 102 54.9
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.3e-19 98.6 201 34.3
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 8.2e-19 98.2 168 39.3
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-18 97.4 225 35.6
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.4e-18 96.7 205 36.6
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 4.1e-18 95.9 173 36.4
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.3e-18 95.5 215 36.3
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.0e-17 93.6 162 37.0
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 2.0e-17 93.6 224 35.3
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 4.5e-17 92.4 200 35.5
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 1.3e-16 90.9 165 37.0
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.3e-16 90.9 165 37.0
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.3e-16 90.9 165 37.0
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 1.3e-16 90.9 219 33.8
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.9e-16 89.7 212 34.4
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.9e-16 89.7 212 34.4
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 2.9e-16 89.7 155 40.0
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 2.9e-16 89.7 222 33.3
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.9e-16 89.7 215 34.4
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.4e-15 87.4 159 37.7
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 2.5e-15 86.7 145 40.0
THA.LOC104809406 Tarenaya hassleriana HOM05D004201 ORTHO05D012052 2.5e-15 86.7 223 34.1
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 3.2e-15 86.3 145 40.0
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 4.2e-15 85.9 159 37.7
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 7.2e-15 85.1 76 56.6
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 9.4e-15 84.7 223 34.1
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.1e-14 83.6 130 40.8
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 2.1e-14 83.6 217 35.9
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 2.7e-14 83.2 227 33.0
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.6e-14 82.4 138 34.8
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 6.1e-14 82.0 158 36.7
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 7.9e-14 81.6 86 48.8
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.8e-13 80.5 191 32.5
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.3e-13 80.1 152 34.9
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 3.0e-13 79.7 157 39.5
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.1e-12 77.8 170 33.5
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.1e-12 77.8 192 32.3
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 1.1e-12 77.8 163 38.0
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.1e-12 77.8 207 32.4
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.1e-12 77.8 207 32.4
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 1.5e-12 77.4 174 33.3
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.0e-12 77.0 182 33.0
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.6e-12 76.6 159 34.6
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 3.3e-12 76.3 187 33.7
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.3e-12 76.3 159 34.6
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.4e-12 75.9 184 33.2
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 5.7e-12 75.5 207 32.9
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 5.7e-12 75.5 86 45.3
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.7e-12 75.5 182 33.0
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 7.4e-12 75.1 203 33.5
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 9.7e-12 74.7 218 32.6
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.7e-11 73.9 170 35.3
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 1.7e-11 73.9 163 34.4
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 2.2e-11 73.6 171 35.1
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 2.2e-11 73.6 171 35.1
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.8e-11 73.2 216 34.3
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.8e-11 72.4 80 46.2
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.1e-10 71.2 111 42.3
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.8e-10 70.5 221 30.3
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 1.8e-10 70.5 163 31.9
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.1e-10 69.3 204 32.4
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 9.1e-10 68.2 197 28.4
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 9.1e-10 68.2 221 28.1
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.2e-09 67.8 153 34.6
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.0e-09 67.0 197 32.0
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 5.0e-08 62.4 173 31.2
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 6.5e-08 62.0 159 31.4
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.5e-07 60.1 156 32.7
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 3.2e-07 59.7 115 37.4
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.5e-07 58.9 213 29.6
CARHR252000 Cardamine hirsuta HOM05D012310 ORTHO05D012594 1.2e-06 57.8 156 28.8
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 1.6e-06 57.4 55 52.7
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.6e-06 56.2 230 30.9
THA.LOC104801560 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 3.6e-06 56.2 158 28.5
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 4.7e-06 55.8 131 32.8


User provided reference genes

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