Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-117 425.2 220 100.0
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-99 365.5 218 82.6
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 1.3e-88 330.1 228 77.2
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-86 323.2 185 83.2
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-86 323.2 185 83.2
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-86 322.4 184 82.6
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 7.1e-79 297.7 228 72.4
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.0e-77 293.9 185 78.4
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 2.4e-74 282.7 183 76.0
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 6.9e-74 281.2 230 67.0
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-73 279.6 228 63.2
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-73 278.9 188 76.6
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 8.5e-72 274.2 229 61.1
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 4.2e-71 271.9 182 71.4
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-70 269.6 228 66.2
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-70 268.5 229 64.6
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 4.6e-70 268.5 221 63.8
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 6.1e-70 268.1 185 75.1
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 7.9e-70 267.7 228 64.0
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 7.9e-70 267.7 228 65.4
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 3.9e-69 265.4 185 71.9
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-67 258.1 230 63.5
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-66 256.5 161 74.5
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-66 256.1 163 73.6
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-65 253.4 161 73.9
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-65 252.7 227 60.4
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 5.9e-65 251.5 237 63.3
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 1.8e-61 240.0 234 63.7
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 4.1e-58 228.8 230 61.7
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-57 226.9 230 60.9
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 2.2e-56 223.0 165 68.5
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 7.2e-55 218.0 154 70.8
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-54 215.7 178 70.2
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 3.1e-50 202.6 222 54.5
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-46 189.5 166 62.0
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 2.8e-43 179.5 161 59.0
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 2.2e-40 169.9 163 55.8
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 2.9e-40 169.5 227 45.4
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.2e-38 164.1 158 55.1
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.7e-38 162.9 163 50.3
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.6e-38 162.5 163 49.7
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 1.0e-37 161.0 154 55.8
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 3.4e-36 156.0 169 47.3
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.3e-35 154.1 157 49.0
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 4.8e-35 152.1 153 52.9
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 4.8e-35 152.1 153 52.9
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-34 151.0 212 42.0
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-34 150.6 176 46.6
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.4e-34 150.6 176 46.6
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 4.1e-34 149.1 169 45.6
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 4.1e-34 149.1 170 47.6
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-34 148.7 152 50.0
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 7.0e-34 148.3 157 48.4
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 9.1e-34 147.9 176 46.0
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 2.0e-33 146.7 176 46.0
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.2e-31 139.0 174 41.4
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-29 134.0 153 47.1
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.0e-29 132.9 167 45.5
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.0e-29 132.9 159 43.4
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 5.2e-29 132.1 164 43.3
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.4e-28 129.0 213 38.0
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 2.8e-27 126.3 164 41.5
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.3e-27 125.2 176 38.6
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.1e-26 124.4 171 40.9
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.8e-26 123.6 151 41.1
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.1e-26 122.5 160 41.9
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.4e-26 122.1 167 38.9
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.2e-26 121.3 168 39.3
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.2e-26 121.3 214 33.6
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.2e-26 121.3 204 39.7
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 2.7e-25 119.8 168 39.9
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.6e-24 115.2 177 36.2
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.6e-24 115.2 171 36.3
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.9e-23 113.6 179 35.8
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 9.5e-23 111.3 125 48.8
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-22 110.9 125 48.8
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-22 110.5 189 40.2
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-22 109.4 156 43.6
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 8.0e-22 108.2 159 43.4
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.2e-21 105.5 160 41.2
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 6.8e-21 105.1 158 41.1
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 8.9e-21 104.8 154 42.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.0e-20 103.6 189 37.6
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.5e-20 101.7 212 32.5
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 1.3e-19 100.9 166 38.6
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 1.7e-19 100.5 119 56.3
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 2.2e-19 100.1 162 40.1
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 2.9e-19 99.8 186 36.6
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 6.4e-19 98.6 218 36.7
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.4e-19 98.6 145 41.4
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.8e-18 97.1 160 41.9
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 1.8e-18 97.1 169 39.6
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 1.6e-17 94.0 153 40.5
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.6e-17 94.0 153 40.5
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.6e-17 94.0 153 40.5
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 2.0e-17 93.6 153 40.5
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 2.3e-16 90.1 185 36.2
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 3.9e-16 89.4 154 39.6
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 3.9e-16 89.4 105 50.5
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 3.9e-16 89.4 105 50.5
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 3.3e-15 86.3 158 36.1
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.3e-15 86.3 157 38.9
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.3e-15 86.3 157 38.9
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 5.6e-15 85.5 135 41.5
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 7.3e-15 85.1 176 33.0
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 7.3e-15 85.1 176 33.0
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-14 84.0 165 35.2
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.6e-14 84.0 158 34.8
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.6e-14 84.0 158 34.8
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 2.1e-14 83.6 162 38.3
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 2.1e-14 83.6 184 33.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.8e-14 83.2 181 37.6
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.0e-13 81.3 156 38.5
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.4e-13 80.9 160 37.5
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 1.8e-13 80.5 153 37.3
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.8e-13 80.5 164 32.3
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 2.3e-13 80.1 159 34.0
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 2.3e-13 80.1 192 34.4
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 2.3e-13 80.1 183 32.2
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 3.1e-13 79.7 74 56.8
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 4.0e-13 79.3 164 39.0
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 4.0e-13 79.3 88 50.0
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 6.8e-13 78.6 191 35.6
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 8.9e-13 78.2 158 34.8
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 1.2e-12 77.8 160 34.4
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.6e-12 76.6 158 36.1
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.4e-12 76.3 84 50.0
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 4.4e-12 75.9 181 32.6
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.8e-12 75.5 153 34.6
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 7.5e-12 75.1 166 34.3
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 7.5e-12 75.1 161 32.9
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 9.8e-12 74.7 69 47.8
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 9.8e-12 74.7 161 32.9
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 1.3e-11 74.3 155 32.3
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 1.3e-11 74.3 163 34.4
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.7e-11 73.9 124 36.3
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 2.2e-11 73.6 158 36.7
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 6.4e-11 72.0 83 45.8
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 8.3e-11 71.6 153 32.0
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.1e-10 71.2 164 33.5
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.4e-10 70.9 213 29.6
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.4e-10 70.9 164 33.5
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.1e-10 69.3 189 32.3
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 4.1e-10 69.3 178 32.0
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.4e-10 68.9 164 33.5
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.2e-10 68.2 79 41.8
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 9.2e-10 68.2 164 31.7
AT4G03565 Arabidopsis thaliana HOM05D012310 ORTHO05D012594 2.7e-09 66.6 183 29.5
BraA03t12217Z Brassica rapa HOM05D012310 ORTHO05D012594 2.7e-09 66.6 164 34.1
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.6e-09 65.9 166 32.5
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.6e-09 65.9 129 31.8
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 6.0e-09 65.5 161 31.7
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 6.0e-09 65.5 158 32.9
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 7.8e-09 65.1 174 30.5
BcaC01g06667 Brassica carinata HOM05D012310 ORTHO05D012594 7.8e-09 65.1 164 32.9
C03p36650 Brassica napus HOM05D012310 ORTHO05D012594 7.8e-09 65.1 164 32.9
BolC3t15979H Brassica oleracea HOM05D012310 ORTHO05D012594 7.8e-09 65.1 164 32.9
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.0e-08 64.7 151 35.8
A03p30350 Brassica napus HOM05D012310 ORTHO05D012594 3.0e-08 63.2 168 32.1
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 6.6e-08 62.0 100 35.0
Thhalv10029282m.g Eutrema salsugineum HOM05D012310 ORTHO05D012594 8.6e-08 61.6 169 30.8


User provided reference genes

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