Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 3.7e-120 434.9 217 100.0
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-97 360.1 218 82.6
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 5.9e-86 321.2 230 73.5
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-85 318.9 190 81.6
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-85 318.9 190 81.6
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 2.8e-83 312.4 186 80.1
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 1.7e-80 303.1 230 67.0
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 2.9e-80 302.4 223 67.3
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 2.7e-78 295.8 220 70.0
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 3.9e-77 292.0 224 67.4
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 3.9e-77 292.0 224 67.4
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-74 283.5 223 65.9
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-74 282.7 223 65.5
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 2.3e-74 282.7 223 65.9
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 3.1e-74 282.3 230 68.3
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 5.2e-74 281.6 225 66.2
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 3.7e-72 275.4 162 79.0
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 3.2e-71 272.3 162 77.8
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 4.1e-71 271.9 226 64.6
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 5.4e-71 271.6 162 77.8
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 9.2e-71 270.8 224 63.4
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 6.0e-70 268.1 216 64.8
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 7.8e-70 267.7 187 69.5
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 3.0e-69 265.8 206 65.5
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 6.2e-67 258.1 228 61.4
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 1.4e-66 256.9 232 60.3
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 5.8e-65 251.5 185 72.4
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-61 240.7 149 77.2
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-61 239.6 160 71.9
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 6.6e-61 238.0 225 60.4
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 8.6e-61 237.7 229 59.4
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 2.5e-60 236.1 225 59.6
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 2.3e-53 213.0 217 57.1
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 1.7e-48 196.8 154 66.9
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-47 193.4 178 62.9
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 1.3e-45 187.2 214 48.6
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 6.7e-45 184.9 200 50.0
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 1.3e-40 170.6 161 57.8
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.2e-40 169.9 156 55.8
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.2e-40 169.9 160 49.4
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 6.4e-40 168.3 152 55.3
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.9e-39 166.8 160 48.8
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-38 163.7 155 50.3
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-36 157.5 207 43.0
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-36 157.1 167 46.7
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 3.3e-36 156.0 155 49.7
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 9.0e-34 147.9 174 46.0
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 9.0e-34 147.9 174 46.0
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-33 147.5 150 48.7
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 2.0e-33 146.7 167 44.9
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 2.6e-33 146.4 151 49.0
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 2.6e-33 146.4 151 49.0
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 5.8e-33 145.2 174 45.4
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.6e-33 144.8 171 43.9
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.2e-32 143.3 202 38.1
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 2.9e-32 142.9 174 44.8
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 1.4e-31 140.6 160 41.9
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.1e-30 136.7 207 37.2
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 2.1e-30 136.7 192 40.6
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.0e-30 135.2 193 42.0
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 7.9e-30 134.8 160 41.2
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.3e-29 134.0 208 41.3
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.1e-29 132.1 210 39.5
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.7e-29 131.3 211 34.1
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-28 131.0 173 40.5
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.1e-26 124.4 148 41.2
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.4e-26 124.0 193 38.9
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.9e-26 121.7 213 34.3
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.0e-25 120.2 174 37.4
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 2.6e-25 119.8 219 34.2
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.3e-24 117.5 165 38.8
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.9e-24 116.3 202 37.1
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.8e-24 115.9 169 36.7
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 1.1e-23 114.4 189 40.7
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 1.2e-22 110.9 161 42.9
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-22 109.4 164 42.7
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 3.6e-22 109.4 162 39.5
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.1e-22 108.6 176 34.1
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 3.9e-21 105.9 203 36.5
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 5.1e-21 105.5 123 44.7
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 6.7e-21 105.1 123 44.7
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-20 104.0 208 32.2
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 2.5e-20 103.2 159 40.9
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.3e-19 100.9 211 38.9
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 6.3e-19 98.6 208 35.1
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.2e-19 98.2 142 40.8
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-18 97.8 166 39.2
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 1.8e-18 97.1 216 34.7
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-18 96.7 119 50.4
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 5.3e-18 95.5 212 31.1
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 5.3e-18 95.5 215 33.5
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.5e-17 94.0 158 42.4
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.6e-17 93.2 223 35.4
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.8e-16 89.4 155 39.4
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.8e-16 89.4 155 39.4
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 5.0e-16 89.0 100 47.0
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 5.0e-16 89.0 100 47.0
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 1.4e-15 87.4 152 38.8
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 1.4e-15 87.4 152 38.8
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 1.4e-15 87.4 152 38.8
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 2.5e-15 86.7 153 39.2
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 2.5e-15 86.7 185 34.6
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 5.5e-15 85.5 174 33.9
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 5.5e-15 85.5 174 33.9
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 7.2e-15 85.1 183 33.9
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 9.4e-15 84.7 134 41.0
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 9.4e-15 84.7 156 39.7
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.4e-15 84.7 181 35.9
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 1.2e-14 84.3 157 36.9
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 1.2e-14 84.3 157 36.9
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.6e-14 84.0 163 38.7
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 3.6e-14 82.8 87 51.7
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 1.0e-13 81.3 156 35.3
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-13 81.3 161 38.5
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 1.8e-13 80.5 200 32.5
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 1.8e-13 80.5 74 56.8
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.0e-13 79.7 113 41.6
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 3.0e-13 79.7 165 33.9
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 3.9e-13 79.3 208 34.1
THA.LOC104801128 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 5.1e-13 79.0 163 34.4
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 8.8e-13 78.2 173 35.8
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.1e-12 77.8 158 34.8
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 1.1e-12 77.8 194 33.0
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.5e-12 77.4 158 34.8
THA.LOC104801127 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.5e-12 77.4 163 33.1
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 2.0e-12 77.0 173 35.3
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 2.6e-12 76.6 153 33.3
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 4.4e-12 75.9 178 33.1
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.7e-12 75.5 166 33.7
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 7.4e-12 75.1 83 49.4
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 1.7e-11 73.9 216 31.0
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 1.7e-11 73.9 160 32.5
THA.LOC104801126 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.8e-11 73.2 163 33.1
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 1.1e-10 71.2 227 30.4
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.4e-10 70.9 220 30.9
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.8e-10 70.5 155 32.9
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 2.4e-10 70.1 206 30.1
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.1e-10 69.3 127 30.7
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 4.1e-10 69.3 226 31.4
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 9.1e-10 68.2 78 43.6
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.2e-09 67.8 200 28.5
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.2e-09 67.8 212 32.5
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.5e-09 67.4 159 31.4
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 1.5e-09 67.4 158 32.9
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 2.0e-09 67.0 69 40.6
CARHR196080 Cardamine hirsuta HOM05D004201 ORTHO05D009648 2.0e-09 67.0 138 29.7
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 2.6e-09 66.6 187 32.6
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.7e-08 63.9 195 29.7
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.7e-08 63.9 215 29.3
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 2.2e-08 63.5 229 30.1
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 1.4e-07 60.8 218 30.7
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 5.5e-07 58.9 227 26.4
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.6e-06 57.4 159 29.6
Aa31LG1G23670 Aethionema arabicum HOM05D004201 ORTHO05D011677 4.7e-06 55.8 229 29.3
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 7.9e-06 55.1 55 50.9


User provided reference genes

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