Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.7e-296 1021.5 625 100.0
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.4e-233 813.1 631 79.6
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 3.3e-230 802.0 638 78.7
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 6.5e-226 787.7 629 77.9
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 1.0e-218 763.8 631 76.7
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.3e-162 577.4 716 56.1
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.5e-155 552.7 717 54.7
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 3.0e-154 549.7 670 57.8
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.4e-148 530.8 723 52.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 4.7e-144 515.8 812 50.7
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 3.9e-138 496.1 660 55.0
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 6.2e-136 488.8 653 54.7
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 9.0e-111 405.2 659 49.6
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 1.0e-109 401.7 651 49.3
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 8.2e-104 382.1 240 89.6
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 8.2e-96 355.5 650 46.2
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.1e-92 345.1 656 46.2
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.4e-89 332.4 652 47.5
C03p60050 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-86 323.2 507 48.9
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.2e-76 290.4 289 63.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 3.5e-54 217.2 181 72.4
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-53 214.5 168 75.6
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.3e-53 214.5 168 75.6
BcaC04g18830 Brassica carinata HOM05D004299 ORTHO05D032718 6.6e-53 213.0 518 43.1
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.4e-41 174.1 300 48.7
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.0e-37 162.5 457 37.0
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 3.0e-37 161.0 677 31.2
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 3.0e-37 161.0 684 32.0
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 5.1e-37 160.2 263 48.7
BolC9t58840H Brassica oleracea HOM05D004299 ORTHO05D032718 1.4e-34 152.1 249 49.4
C09p60050 Brassica napus HOM05D004299 ORTHO05D032718 2.3e-34 151.4 244 50.0
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 7.5e-33 146.4 657 35.0
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 3.2e-31 141.0 241 46.5
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.1e-31 139.8 444 37.8
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 2.1e-27 128.3 233 42.5
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 8.1e-27 126.3 397 36.0
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 8.1e-27 126.3 397 36.0
C03p09510 Brassica napus HOM05D004299 ORTHO05D024603 1.4e-26 125.6 84 85.7
A10p22240 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-24 118.6 102 71.6
BraA10t44283Z Brassica rapa HOM05D004299 ORTHO05D003557 1.7e-24 118.6 102 71.6
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-24 118.2 639 30.0
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 2.2e-24 118.2 639 30.0
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 7.1e-23 113.2 219 38.8
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.6e-22 112.1 234 37.6
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 2.1e-22 111.7 346 37.3
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.7e-22 111.3 321 34.3
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 3.5e-22 110.9 314 34.4
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 7.8e-22 109.8 233 39.9
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.0e-21 109.4 315 34.6
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.9e-21 107.5 613 30.0
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 4.3e-20 104.0 416 31.0
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 3.6e-19 100.9 277 33.9
A10p22260 Brassica napus HOM05D004299 ORTHO05D024603 6.2e-19 100.1 85 69.4
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 6.2e-19 100.1 353 28.9
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.4e-18 98.2 236 37.3
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 6.9e-18 96.7 193 39.9
BraA10t44285Z Brassica rapa HOM05D004299 ORTHO05D024603 1.5e-17 95.5 81 70.4
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 4.4e-17 94.0 267 31.8
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.2e-16 91.7 297 31.3
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 2.2e-16 91.7 640 27.7
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.9e-16 91.3 299 34.8
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 4.9e-16 90.5 476 29.8
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 4.9e-16 90.5 682 27.3
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 6.4e-16 90.1 228 35.5
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 8.4e-16 89.7 457 30.2
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 2.4e-15 88.2 134 44.8
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 3.2e-15 87.8 375 29.1
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 5.4e-15 87.0 320 32.2
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 7.1e-15 86.7 205 40.0
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 9.3e-15 86.3 656 26.8
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 1.2e-14 85.9 389 30.3
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.6e-14 85.5 141 44.7
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.1e-14 85.1 247 32.4
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.7e-14 84.7 158 42.4
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 3.5e-14 84.3 273 32.6
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 3.5e-14 84.3 341 29.9
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.5e-14 84.3 394 29.4
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 4.6e-14 84.0 125 46.4
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.0e-13 82.8 284 31.3
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.7e-13 82.0 419 29.6
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 2.3e-13 81.6 447 28.2
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 2.3e-13 81.6 245 34.3
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 5.1e-13 80.5 824 24.8
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 5.1e-13 80.5 719 25.6
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 5.1e-13 80.5 207 38.6
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 6.6e-13 80.1 240 31.7
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 8.7e-13 79.7 388 25.8
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.5e-12 79.0 385 30.1
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 2.5e-12 78.2 210 37.1
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.3e-12 77.8 486 28.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 3.3e-12 77.8 464 28.9
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.3e-12 77.4 424 28.1
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.3e-12 77.4 366 27.6
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.3e-12 77.4 278 32.7
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 5.6e-12 77.0 360 30.0
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 7.3e-12 76.6 286 28.3
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 9.6e-12 76.3 216 34.7
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 9.6e-12 76.3 459 28.8
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.1e-11 75.1 669 29.0
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.8e-11 74.7 456 29.4
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 4.8e-11 73.9 346 29.2
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 8.1e-11 73.2 619 28.3
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.4e-10 72.4 274 30.7
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.4e-10 72.4 669 28.1
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.4e-10 72.4 332 28.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.1e-10 71.2 706 26.8
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 6.9e-10 70.1 477 28.5
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 6.9e-10 70.1 449 29.2
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 9.0e-10 69.7 244 30.7
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.0e-09 68.6 359 30.6
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.0e-09 68.6 427 26.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.6e-09 68.2 64 59.4
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.4e-09 67.8 427 30.7
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.5e-09 67.4 308 28.2
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 7.6e-09 66.6 479 26.7
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 7.6e-09 66.6 39 79.5
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 7.6e-09 66.6 91 45.1
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 7.6e-09 66.6 426 30.5
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 2.9e-08 64.7 95 45.3
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 3.8e-08 64.3 496 26.8
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 6.4e-08 63.5 408 28.2
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 6.4e-08 63.5 449 26.9
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 8.4e-08 63.2 415 29.6
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 8.4e-08 63.2 369 27.4
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 2.4e-07 61.6 471 26.3
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.4e-07 61.6 463 27.6
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 2.4e-07 61.6 93 45.2
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 3.2e-07 61.2 364 29.1
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 3.2e-07 61.2 351 28.2
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 4.2e-07 60.8 148 36.5
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.1e-07 60.1 459 26.4
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 7.1e-07 60.1 728 24.5
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 2.1e-06 58.5 37 70.3
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 2.1e-06 58.5 37 70.3
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.7e-06 58.2 307 28.7
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 2.7e-06 58.2 131 38.2
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 4.6e-06 57.4 278 29.5
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 7.9e-06 56.6 413 25.9


User provided reference genes

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