Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 2.3e-91 339.0 183 100.0
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 2.0e-79 299.3 184 91.3
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 2.0e-79 299.3 184 91.3
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 3.5e-79 298.5 185 91.4
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 3.5e-79 298.5 184 90.8
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 3.5e-79 298.5 185 91.4
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 7.3e-77 290.8 184 87.0
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 1.2e-76 290.0 183 86.9
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 7.0e-72 274.2 178 83.1
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 3.5e-71 271.9 183 84.7
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 1.3e-70 270.0 184 83.2
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 2.3e-70 269.2 183 82.0
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 7.3e-69 264.2 184 81.0
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 8.0e-68 260.8 183 82.0
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 1.8e-67 259.6 183 80.3
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 1.8e-67 259.6 175 81.1
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 4.0e-67 258.5 175 81.1
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 2.4e-56 222.6 182 72.0
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 6.8e-51 204.5 186 66.7
AT5G17560 Arabidopsis thaliana HOM05D006461 ORTHO05D008199 8.4e-41 171.0 135 74.8
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 7.3e-37 157.9 185 54.6
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 9.6e-37 157.5 185 56.2
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 1.3e-36 157.1 180 54.4
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 2.1e-36 156.4 182 56.6
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 2.1e-36 156.4 184 56.0
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 2.8e-36 156.0 181 53.0
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 1.8e-35 153.3 178 54.5
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 6.9e-35 151.4 96 80.2
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 6.9e-35 151.4 95 82.1
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 1.5e-34 150.2 96 79.2
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 2.0e-34 149.8 95 80.0
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 2.6e-34 149.4 185 54.1
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 2.6e-34 149.4 95 78.9
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 3.4e-34 149.1 96 78.1
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 3.4e-34 149.1 193 54.4
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 4.5e-34 148.7 95 78.9
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 4.5e-34 148.7 95 78.9
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 4.5e-34 148.7 95 78.9
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 4.5e-34 148.7 104 73.1
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 5.8e-34 148.3 95 77.9
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 7.6e-34 147.9 96 77.1
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 7.6e-34 147.9 141 61.7
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 7.6e-34 147.9 95 77.9
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 9.9e-34 147.5 105 73.3
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 1.3e-33 147.1 95 77.9
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 1.7e-33 146.7 90 81.1
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 1.7e-33 146.7 183 52.5
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 2.2e-33 146.4 196 51.5
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 2.2e-33 146.4 95 76.8
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 2.9e-33 146.0 96 76.0
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 2.9e-33 146.0 96 76.0
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 4.9e-33 145.2 172 53.5
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 4.9e-33 145.2 157 56.1
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 6.4e-33 144.8 172 53.5
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 6.4e-33 144.8 95 76.8
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 8.4e-33 144.4 196 51.0
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 1.1e-32 144.1 95 75.8
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 1.9e-32 143.3 98 75.5
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 1.9e-32 143.3 104 71.2
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 2.4e-32 142.9 89 79.8
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 5.4e-32 141.7 98 72.4
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 7.1e-32 141.4 95 77.9
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 1.2e-31 140.6 91 78.0
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 1.6e-31 140.2 95 76.8
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 2.1e-31 139.8 96 71.9
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 2.7e-31 139.4 89 77.5
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 2.7e-31 139.4 116 68.1
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 2.7e-31 139.4 196 51.0
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 3.5e-31 139.0 99 71.7
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 4.6e-31 138.7 135 59.3
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 4.6e-31 138.7 95 76.8
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 7.9e-31 137.9 95 75.8
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 7.9e-31 137.9 100 72.0
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 7.9e-31 137.9 97 72.2
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 2.3e-30 136.3 94 69.1
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 3.0e-30 136.0 93 71.0
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 3.0e-30 136.0 89 78.7
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 3.0e-30 136.0 186 52.2
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 3.9e-30 135.6 86 77.9
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 3.9e-30 135.6 95 73.7
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 3.9e-30 135.6 95 71.6
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 5.1e-30 135.2 95 72.6
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 6.7e-30 134.8 96 75.0
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 1.5e-29 133.7 95 70.5
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 3.3e-29 132.5 86 76.7
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 4.3e-29 132.1 102 69.6
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 7.4e-29 131.3 97 72.2
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 7.4e-29 131.3 86 76.7
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 1.3e-28 130.6 86 79.1
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 1.6e-28 130.2 96 72.9
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 2.8e-28 129.4 135 57.0
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 3.7e-28 129.0 98 69.4
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 3.7e-28 129.0 163 48.5
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 6.2e-28 128.3 144 52.8
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 8.1e-28 127.9 86 75.6
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 2.4e-27 126.3 75 84.0
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 4.0e-27 125.6 75 84.0
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 1.2e-26 124.0 121 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 2.6e-26 122.9 97 61.9
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 4.5e-26 122.1 95 67.4
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 3.8e-25 119.0 137 54.7
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 4.9e-25 118.6 231 42.0
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 3.2e-24 115.9 73 78.1
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 7.1e-24 114.8 114 57.9
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 4.6e-23 112.1 67 82.1
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 6.0e-23 111.7 183 41.5
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 1.3e-20 104.0 96 57.3
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 1.1e-19 100.9 130 47.7
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 1.3e-17 94.0 81 54.3
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 5.5e-16 88.6 77 59.7
Cpa.g.sc2589.1 Carica papaya HOM05D006461 ORTHO05D008199 4.6e-15 85.5 141 44.7
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.9e-14 82.4 45 84.4
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 3.9e-14 82.4 45 84.4
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 1.1e-13 80.9 45 86.7
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 1.9e-13 80.1 72 48.6
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 2.5e-13 79.7 59 66.1
SHI39095 Sapria himalayana HOM05D006461 ORTHO05D008199 2.2e-12 76.6 124 41.1
Aa31LG5G14020 Aethionema arabicum HOM05D006461 ORTHO05D008199 6.5e-09 65.1 108 48.1
Thhalv10002241m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 8.5e-09 64.7 47 78.7
Actinidia28897 Actinidia chinensis HOM05D006461 ORTHO05D008199 3.2e-08 62.8 66 53.0
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 3.2e-08 62.8 74 54.1
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 1.2e-07 60.8 39 79.5
AL3G13180 Arabidopsis lyrata HOM05D058763 ORTHO05D079728 2.7e-07 59.7 58 56.9
Sc16g0010190 Simmondsia chinensis HOM05D002854 ORTHO05D003051 3.0e-06 56.2 82 40.2
Pp3c5_25080 Physcomitrium patens HOM05D002854 ORTHO05D003051 3.9e-06 55.8 90 38.9
Sopen12g007810 Solanum pennellii HOM05D002854 ORTHO05D003051 5.1e-06 55.5 110 36.4
PGSC0003DMG402029805 Solanum tuberosum HOM05D002854 ORTHO05D003051 5.1e-06 55.5 99 38.4
Oeu019053.1 Olea europaea HOM05D002854 ORTHO05D003051 6.7e-06 55.1 97 35.1


User provided reference genes

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