Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 4.4e-56 221.1 113 100.0
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 2.2e-52 208.8 113 94.7
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 2.2e-52 208.8 113 94.7
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 6.1e-50 200.7 112 92.9
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 1.8e-49 199.1 112 92.9
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 1.2e-48 196.4 113 89.4
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 2.4e-46 188.7 115 87.0
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 5.3e-46 187.6 115 85.2
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 7.0e-46 187.2 115 86.1
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 7.7e-45 183.7 115 85.2
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 7.7e-45 183.7 113 85.0
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 1.0e-44 183.3 115 85.2
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 1.7e-44 182.6 111 86.5
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 5.0e-44 181.0 112 84.8
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 5.0e-44 181.0 115 83.5
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 2.5e-43 178.7 113 84.1
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 7.2e-43 177.2 113 84.1
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 9.4e-43 176.8 113 82.3
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.6e-42 176.0 113 83.2
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 4.7e-42 174.5 113 82.3
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 8.0e-42 173.7 113 80.5
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 3.1e-38 161.8 113 80.5
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 3.1e-38 161.8 113 80.5
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 1.2e-37 159.8 113 76.1
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 6.1e-34 147.5 112 75.9
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 6.8e-33 144.1 96 80.2
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 5.7e-24 114.4 105 58.1
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 9.8e-24 113.6 115 55.7
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 9.8e-24 113.6 104 59.6
BcaB05g23287 Brassica carinata HOM05D006906 ORTHO05D008578 1.3e-23 113.2 113 61.9
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 1.7e-23 112.8 102 60.8
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 2.2e-23 112.5 113 58.4
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 3.7e-23 111.7 103 57.3
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 3.7e-23 111.7 104 59.6
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 6.4e-23 110.9 107 56.1
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 1.1e-22 110.2 97 60.8
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 1.4e-22 109.8 109 55.0
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 3.2e-22 108.6 102 57.8
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 3.2e-22 108.6 95 56.8
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 4.1e-22 108.2 98 60.2
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 4.1e-22 108.2 109 57.8
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 9.2e-22 107.1 95 58.9
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 9.2e-22 107.1 112 57.1
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.2e-21 106.7 103 55.3
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 1.2e-21 106.7 117 53.8
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 3.5e-21 105.1 77 71.4
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 5.9e-21 104.4 93 61.3
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 5.9e-21 104.4 89 60.7
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 7.8e-21 104.0 96 57.3
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.3e-20 103.2 113 53.1
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 1.3e-20 103.2 111 51.4
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 2.3e-20 102.4 96 59.4
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 2.3e-20 102.4 102 55.9
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 6.6e-20 100.9 93 57.0
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 8.6e-20 100.5 112 52.7
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 1.1e-19 100.1 100 56.0
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 1.1e-19 100.1 111 52.3
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.1e-19 100.1 110 50.9
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 1.5e-19 99.8 106 53.8
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 1.5e-19 99.8 102 53.9
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 1.9e-19 99.4 75 65.3
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 1.9e-19 99.4 90 61.1
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 1.9e-19 99.4 90 61.1
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 1.9e-19 99.4 101 52.5
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 2.5e-19 99.0 64 70.3
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 3.3e-19 98.6 90 61.1
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 3.3e-19 98.6 97 54.6
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 3.3e-19 98.6 103 52.4
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 5.6e-19 97.8 66 71.2
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 5.6e-19 97.8 66 71.2
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 5.6e-19 97.8 102 52.9
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 5.6e-19 97.8 69 72.5
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 1.2e-18 96.7 55 78.2
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 1.2e-18 96.7 97 54.6
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 1.6e-18 96.3 50 86.0
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 1.6e-18 96.3 66 69.7
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 2.1e-18 95.9 66 69.7
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 4.7e-18 94.7 106 51.9
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 6.2e-18 94.4 102 50.0
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 6.2e-18 94.4 105 49.5
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 1.4e-17 93.2 114 48.2
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 1.4e-17 93.2 66 68.2
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 1.4e-17 93.2 113 49.6
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.8e-17 92.8 53 77.4
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 3.1e-17 92.0 108 49.1
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 3.1e-17 92.0 108 48.1
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 5.2e-17 91.3 95 54.7
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 5.2e-17 91.3 112 49.1
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 6.8e-17 90.9 109 47.7
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 6.8e-17 90.9 71 64.8
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 6.8e-17 90.9 93 53.8
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 1.5e-16 89.7 96 54.2
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 2.0e-16 89.4 100 53.0
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 2.6e-16 89.0 118 47.5
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 2.6e-16 89.0 95 50.5
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 3.4e-16 88.6 114 50.0
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 3.4e-16 88.6 72 58.3
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 4.4e-16 88.2 96 52.1
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 7.5e-16 87.4 64 64.1
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 9.8e-16 87.0 47 78.7
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 4.9e-15 84.7 93 53.8
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 6.4e-15 84.3 93 50.5
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 6.4e-15 84.3 93 50.5
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 1.9e-14 82.8 98 52.0
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 3.2e-14 82.0 87 51.7
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 1.2e-13 80.1 82 56.1
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 4.3e-11 71.6 39 87.2
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 1.2e-10 70.1 109 43.1
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 1.6e-10 69.7 86 43.0
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 2.8e-10 68.9 66 57.6
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 3.4e-08 62.0 61 54.1
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 1.7e-07 59.7 41 68.3
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 2.9e-07 58.9 63 54.0


User provided reference genes

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