Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 4.3e-81 304.7 161 100.0
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 1.3e-66 256.5 161 88.8
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 3.0e-66 255.4 161 88.2
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 3.0e-66 255.4 161 88.2
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 3.0e-66 255.4 161 88.2
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 9.0e-63 243.8 161 83.9
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 8.4e-61 237.3 161 83.2
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 3.2e-60 235.3 161 83.9
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 1.3e-58 229.9 161 82.0
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 9.6e-57 223.8 161 75.2
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 6.2e-56 221.1 161 78.9
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 2.0e-54 216.1 161 78.3
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 5.8e-54 214.5 163 77.9
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 1.9e-52 209.5 161 74.5
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 4.6e-51 204.9 162 79.0
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 9.0e-39 164.1 128 71.1
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 3.8e-37 158.7 114 76.3
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 3.8e-37 158.7 114 76.3
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 2.1e-35 152.9 105 75.2
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 3.5e-35 152.1 165 54.5
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 1.3e-34 150.2 113 72.6
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 3.9e-34 148.7 113 69.9
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.5e-33 146.0 159 56.6
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 2.5e-33 146.0 100 73.0
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 2.5e-33 146.0 112 67.9
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 3.3e-33 145.6 112 69.6
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 3.3e-33 145.6 113 69.9
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 4.3e-33 145.2 100 75.0
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 7.4e-33 144.4 115 62.6
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 2.2e-32 142.9 133 63.2
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 2.8e-32 142.5 113 67.3
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 4.8e-32 141.7 151 53.6
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 4.8e-32 141.7 94 73.4
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 8.2e-32 141.0 100 75.0
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.1e-31 140.6 160 54.4
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 1.4e-31 140.2 112 68.8
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.4e-31 140.2 107 72.9
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 1.8e-31 139.8 165 53.3
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.8e-31 139.8 151 58.3
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 4.1e-31 138.7 99 74.7
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 5.3e-31 138.3 100 72.0
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 5.3e-31 138.3 92 67.4
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 6.9e-31 137.9 82 78.0
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 1.2e-30 137.1 163 52.1
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 1.2e-30 137.1 130 61.5
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 3.4e-30 135.6 99 71.7
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 4.5e-30 135.2 90 70.0
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 7.6e-30 134.4 93 64.5
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 1.0e-29 134.0 81 72.8
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.3e-29 133.7 81 72.8
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.7e-29 133.3 111 67.6
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 2.2e-29 132.9 142 57.7
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 2.9e-29 132.5 86 67.4
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 3.8e-29 132.1 111 66.7
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 3.8e-29 132.1 113 65.5
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 5.0e-29 131.7 87 69.0
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 5.0e-29 131.7 91 70.3
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 8.5e-29 131.0 89 69.7
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 8.5e-29 131.0 168 51.2
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 8.5e-29 131.0 113 65.5
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.1e-28 130.6 99 69.7
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 1.1e-28 130.6 168 53.0
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.9e-28 129.8 80 72.5
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 1.9e-28 129.8 93 67.7
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 2.5e-28 129.4 105 68.6
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 2.5e-28 129.4 92 66.3
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 3.2e-28 129.0 129 61.2
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.2e-28 129.0 105 59.0
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 3.2e-28 129.0 90 67.8
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 3.2e-28 129.0 121 55.4
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 4.2e-28 128.6 85 72.9
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 5.5e-28 128.3 82 70.7
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 5.5e-28 128.3 112 65.2
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 5.5e-28 128.3 113 65.5
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 5.5e-28 128.3 114 67.5
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 7.2e-28 127.9 104 59.6
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 9.3e-28 127.5 104 58.7
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 1.2e-27 127.1 91 65.9
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 1.6e-27 126.7 104 58.7
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.6e-27 126.7 90 71.1
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.6e-27 126.7 162 51.9
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 1.6e-27 126.7 100 71.0
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 2.7e-27 125.9 82 68.3
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 3.6e-27 125.6 112 66.1
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 3.6e-27 125.6 118 61.0
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 4.6e-27 125.2 80 72.5
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 6.1e-27 124.8 124 53.2
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 6.1e-27 124.8 78 71.8
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 7.9e-27 124.4 108 56.5
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.3e-26 123.6 162 48.1
BolC2t06845H Brassica oleracea HOM05D005516 ORTHO05D006713 1.8e-26 123.2 94 77.7
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.8e-26 123.2 121 59.5
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 2.3e-26 122.9 151 53.0
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 3.0e-26 122.5 81 66.7
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 3.0e-26 122.5 114 65.8
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 3.9e-26 122.1 109 54.1
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 5.1e-26 121.7 100 67.0
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 5.1e-26 121.7 113 61.9
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 1.1e-25 120.6 98 57.1
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 1.1e-25 120.6 94 71.3
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.5e-25 120.2 89 64.0
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 3.3e-25 119.0 100 62.0
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 4.3e-25 118.6 113 58.4
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 4.3e-25 118.6 157 49.0
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 5.7e-25 118.2 163 47.2
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 9.7e-25 117.5 80 66.2
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 1.7e-24 116.7 81 66.7
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 2.2e-24 116.3 97 62.9
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 2.8e-24 115.9 85 61.2
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 4.8e-24 115.2 113 57.5
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 6.3e-24 114.8 146 47.3
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 1.1e-23 114.0 108 51.9
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 1.4e-23 113.6 84 63.1
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.8e-23 113.2 146 47.9
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.4e-23 112.8 82 59.8
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 3.1e-23 112.5 87 62.1
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 6.9e-23 111.3 89 56.2
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 6.9e-23 111.3 113 50.4
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 9.1e-23 110.9 70 68.6
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 3.4e-22 109.0 68 76.5
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 7.9e-19 97.8 84 67.9
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 4.4e-17 92.0 56 69.6
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.2e-16 89.7 81 60.5
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 8.2e-16 87.8 78 50.0
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 3.1e-15 85.9 86 52.3
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 1.5e-14 83.6 74 55.4
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 2.6e-14 82.8 67 65.7
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 3.8e-13 79.0 96 44.8
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 5.0e-13 78.6 85 50.6
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.1e-12 77.4 60 58.3
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.4e-12 74.3 59 54.2
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.4e-12 74.3 59 54.2
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 2.3e-10 69.7 44 68.2
BcaC03g13547 Brassica carinata HOM05D005516 ORTHO05D006713 1.7e-08 63.5 52 73.1
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 2.2e-08 63.2 39 69.2
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 1.6e-06 57.0 55 52.7


User provided reference genes

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