Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04916 Brassica carinata HOM05D003634 ORTHO05D004146 4.8e-56 221.1 124 100.0
BcaNung05935 Brassica carinata HOM05D003634 ORTHO05D004146 1.2e-35 153.3 113 75.2
A10p05270 Brassica napus HOM05D003634 ORTHO05D004146 2.7e-35 152.1 94 86.2
BraA10t42792Z Brassica rapa HOM05D003634 ORTHO05D004146 2.7e-35 152.1 94 86.2
A09p66850 Brassica napus HOM05D003634 ORTHO05D004146 3.0e-34 148.7 113 72.6
BolC8t52634H Brassica oleracea HOM05D003634 ORTHO05D004146 3.0e-34 148.7 113 72.6
Thhalv10008504m.g Eutrema salsugineum HOM05D003634 ORTHO05D004146 3.0e-34 148.7 113 78.8
C08p51070 Brassica napus HOM05D003634 ORTHO05D004146 8.8e-34 147.1 113 71.7
BolC5t29259H Brassica oleracea HOM05D003634 ORTHO05D004146 8.8e-34 147.1 94 91.5
BraA09t42022Z Brassica rapa HOM05D003634 ORTHO05D004146 8.8e-34 147.1 113 71.7
C05p04870 Brassica napus HOM05D003634 ORTHO05D004146 1.5e-33 146.4 113 78.8
CARHR006360 Cardamine hirsuta HOM05D003634 ORTHO05D004146 4.4e-33 144.8 94 88.3
AL1G16690 Arabidopsis lyrata HOM05D003634 ORTHO05D004146 5.7e-33 144.4 94 88.3
Carub.0001s0601 Capsella rubella HOM05D003634 ORTHO05D004146 5.7e-33 144.4 94 88.3
BcaC07g42054 Brassica carinata HOM05D003634 ORTHO05D004146 6.3e-32 141.0 114 70.2
AT1G06680 Arabidopsis thaliana HOM05D003634 ORTHO05D004146 4.1e-31 138.3 94 85.1
Sp1g05410 Schrenkiella parvula HOM05D003634 ORTHO05D004146 1.6e-30 136.3 113 72.6
Aa31LG1G7720 Aethionema arabicum HOM05D003634 ORTHO05D004146 5.9e-30 134.4 114 69.3
AL4G25720 Arabidopsis lyrata HOM05D003634 ORTHO05D004146 5.9e-30 134.4 94 77.7
Aa31LG5G6070 Aethionema arabicum HOM05D003634 ORTHO05D004146 2.9e-29 132.1 95 76.8
BcaB02g10342 Brassica carinata HOM05D003634 ORTHO05D004146 8.5e-29 130.6 94 73.4
BcaC07g36796 Brassica carinata HOM05D003634 ORTHO05D004146 1.9e-28 129.4 114 69.3
C08p02670 Brassica napus HOM05D003634 ORTHO05D004146 1.9e-28 129.4 114 69.3
BolC8t47063H Brassica oleracea HOM05D003634 ORTHO05D004146 1.9e-28 129.4 114 69.3
A08p35900 Brassica napus HOM05D003634 ORTHO05D004146 3.2e-28 128.6 114 68.4
BraA08t35497Z Brassica rapa HOM05D003634 ORTHO05D004146 3.2e-28 128.6 114 68.4
Carub.0004s1200 Capsella rubella HOM05D003634 ORTHO05D004146 5.5e-28 127.9 95 75.8
BcaC02g11165 Brassica carinata HOM05D003634 ORTHO05D004146 3.6e-27 125.2 94 74.5
C04p19800 Brassica napus HOM05D003634 ORTHO05D004146 3.6e-27 125.2 94 74.5
BolC4t23513H Brassica oleracea HOM05D003634 ORTHO05D004146 3.6e-27 125.2 94 74.5
THA.LOC104826247 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 4.7e-27 124.8 94 72.3
A05p14800 Brassica napus HOM05D003634 ORTHO05D004146 1.4e-26 123.2 94 69.1
BraA05t20408Z Brassica rapa HOM05D003634 ORTHO05D004146 1.4e-26 123.2 94 69.1
CARHR124260 Cardamine hirsuta HOM05D003634 ORTHO05D004146 4.4e-25 118.2 94 71.3
Thhalv10017096m.g Eutrema salsugineum HOM05D003634 ORTHO05D004146 4.4e-25 118.2 94 75.5
Nitab4.5_0008321g0040 Nicotiana tabacum HOM05D003634 ORTHO05D004146 1.3e-24 116.7 104 66.3
Ciclev10032502m.g Citrus clementina HOM05D003634 ORTHO05D004146 2.0e-22 109.4 96 64.6
Cpa.g.sc187.7 Carica papaya HOM05D003634 ORTHO05D004146 4.5e-22 108.2 96 63.5
Ah.03g147560 Amaranthus hybridus HOM05D003634 ORTHO05D004146 2.2e-21 105.9 99 61.6
Peaxi162Scf00359g01218 Petunia axillaris HOM05D003634 ORTHO05D004146 2.9e-21 105.5 99 63.6
Atru.chr6.2016 Acer truncatum HOM05D003634 ORTHO05D004146 8.5e-21 104.0 96 61.5
Gohir.D04G034900 Gossypium hirsutum HOM05D003634 ORTHO05D004146 1.5e-20 103.2 95 67.4
Gorai.012G039400 Gossypium raimondii HOM05D003634 ORTHO05D004146 1.5e-20 103.2 95 67.4
Gohir.A05G380700 Gossypium hirsutum HOM05D003634 ORTHO05D004146 1.9e-20 102.8 95 66.3
Phvul.008G196500 Phaseolus vulgaris HOM05D003634 ORTHO05D004146 4.2e-20 101.7 97 60.8
Thecc.01G166600 Theobroma cacao HOM05D003634 ORTHO05D004146 4.2e-20 101.7 99 66.7
EL10Ac6g15357 Beta vulgaris HOM05D003634 ORTHO05D004146 5.5e-20 101.3 99 62.6
Duzib264G1267 Durio zibethinus HOM05D003634 ORTHO05D004146 5.5e-20 101.3 96 62.5
arahy.Tifrunner.gnm1.ann1.1944SK Arachis hypogaea HOM05D003634 ORTHO05D004146 7.2e-20 100.9 95 63.2
MBI18_g28201_MAGBIO Magnolia biondii HOM05D003634 ORTHO05D004146 9.4e-20 100.5 97 60.8
Cc05_g00840 Coffea canephora HOM05D003634 ORTHO05D004146 1.6e-19 99.8 99 61.6
Hund04362 Selenicereus undatus HOM05D003634 ORTHO05D004146 1.6e-19 99.8 98 60.2
VMungo0647G2531 Vigna mungo HOM05D003634 ORTHO05D004146 1.6e-19 99.8 97 58.8
arahy.Tifrunner.gnm1.ann1.30A6BG Arachis hypogaea HOM05D003634 ORTHO05D004146 2.1e-19 99.4 95 62.1
Lj6g0020294 Lotus japonicus HOM05D003634 ORTHO05D004146 2.1e-19 99.4 95 62.1
PGR142G4178 Punica granatum HOM05D003634 ORTHO05D004146 2.1e-19 99.4 96 59.4
QL08p045530 Quercus lobata HOM05D003634 ORTHO05D004146 2.1e-19 99.4 96 60.4
Sabra02G0045200 Salix brachista HOM05D003634 ORTHO05D004146 2.1e-19 99.4 96 59.4
Nn7g37873 Nelumbo nucifera HOM05D003634 ORTHO05D004146 2.7e-19 99.0 96 60.4
MSTRG.12265 Avicennia marina HOM05D003634 ORTHO05D004146 3.6e-19 98.6 99 60.6
Potri.002G055700 Populus trichocarpa HOM05D003634 ORTHO05D004146 3.6e-19 98.6 96 58.3
AUR62017838 Chenopodium quinoa HOM05D003634 ORTHO05D004146 4.7e-19 98.2 98 60.2
CiPaw.04G137000 Carya illinoinensis HOM05D003634 ORTHO05D004146 6.1e-19 97.8 96 64.6
Glyma.02G282500 Glycine max HOM05D003634 ORTHO05D004146 8.0e-19 97.4 94 58.5
LjContig00049g0021127 Lotus japonicus HOM05D003634 ORTHO05D004146 8.0e-19 97.4 97 60.8
Potri.005G206700 Populus trichocarpa HOM05D003634 ORTHO05D004146 1.0e-18 97.1 96 56.2
Haze_13608 Corylus avellana HOM05D003634 ORTHO05D004146 1.4e-18 96.7 96 58.3
Ah.02g120770 Amaranthus hybridus HOM05D003634 ORTHO05D004146 1.8e-18 96.3 94 57.4
Cfa023023 Carpinus fangiana HOM05D003634 ORTHO05D004146 1.8e-18 96.3 96 58.3
Solyc07g044860.3 Solanum lycopersicum HOM05D003634 ORTHO05D004146 1.8e-18 96.3 94 59.6
MBI02_g35794_MAGBIO Magnolia biondii HOM05D003634 ORTHO05D004146 2.3e-18 95.9 97 58.8
DCAR_023039 Daucus carota HOM05D003634 ORTHO05D004146 3.0e-18 95.5 106 54.7
Lalb_Chr04g0249011 Lupinus albus HOM05D003634 ORTHO05D004146 3.0e-18 95.5 94 58.5
arahy.Tifrunner.gnm1.ann1.MMUF9T Arachis hypogaea HOM05D003634 ORTHO05D004146 4.0e-18 95.1 95 57.9
Sed0008663 Sechium edule HOM05D003634 ORTHO05D004146 4.0e-18 95.1 98 60.2
DCAR_009820 Daucus carota HOM05D003634 ORTHO05D004146 5.2e-18 94.7 101 57.4
Phvul.006G027801 Phaseolus vulgaris HOM05D003634 ORTHO05D004146 5.2e-18 94.7 97 60.8
VMungo0540G1926 Vigna mungo HOM05D003634 ORTHO05D004146 5.2e-18 94.7 98 60.2
CSS0028528 Camellia sinensis var. sinensis HOM05D003634 ORTHO05D004146 6.8e-18 94.4 103 58.3
Glyma.14G031800 Glycine max HOM05D003634 ORTHO05D004146 8.8e-18 94.0 98 59.2
CDE12G0092 Ceratophyllum demersum HOM05D003634 ORTHO05D004146 1.2e-17 93.6 97 57.7
MSTRG.14106 Avicennia marina HOM05D003634 ORTHO05D004146 1.5e-17 93.2 101 58.4
Glyma.08G304200 Glycine max HOM05D003634 ORTHO05D004146 1.5e-17 93.2 98 57.1
Sopen07g023420 Solanum pennellii HOM05D003634 ORTHO05D004146 2.0e-17 92.8 94 60.6
AUR62003524 Chenopodium quinoa HOM05D003634 ORTHO05D004146 5.7e-17 91.3 98 59.2
COL.COLO4_29888 Corchorus olitorius HOM05D003634 ORTHO05D004146 5.7e-17 91.3 71 69.0
Lalb_Chr17g0348121 Lupinus albus HOM05D003634 ORTHO05D004146 5.7e-17 91.3 98 56.1
Manes.02G089900 Manihot esculenta HOM05D003634 ORTHO05D004146 5.7e-17 91.3 97 57.7
Sabra05G0157200 Salix brachista HOM05D003634 ORTHO05D004146 5.7e-17 91.3 97 53.6
Oeu056845.1 Olea europaea HOM05D003634 ORTHO05D004146 7.5e-17 90.9 95 52.6
Oeu056847.1 Olea europaea HOM05D003634 ORTHO05D004146 7.5e-17 90.9 95 52.6
Prupe.3G179400 Prunus persica HOM05D003634 ORTHO05D004146 7.5e-17 90.9 98 58.2
PGSC0003DMG400000926 Solanum tuberosum HOM05D003634 ORTHO05D004146 7.5e-17 90.9 97 59.8
Lj1A651T46 Lonicera japonica HOM05D003634 ORTHO05D004146 9.8e-17 90.5 98 53.1
Psat5g189160 Pisum sativum HOM05D003634 ORTHO05D004146 9.8e-17 90.5 94 55.3
Dinv20234 Davidia involucrata HOM05D003634 ORTHO05D004146 1.3e-16 90.1 98 57.1
Eucgr.A02039 Eucalyptus grandis HOM05D003634 ORTHO05D004146 1.3e-16 90.1 98 55.1
Lalb_Chr10g0106481 Lupinus albus HOM05D003634 ORTHO05D004146 1.7e-16 89.7 95 56.8
Manes.01G131300 Manihot esculenta HOM05D003634 ORTHO05D004146 1.7e-16 89.7 98 55.1
THA.LOC104816082 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 1.7e-16 89.7 75 68.0
Glyma.18G114900 Glycine max HOM05D003634 ORTHO05D004146 2.2e-16 89.4 101 55.4
Oeu012357.1 Olea europaea HOM05D003634 ORTHO05D004146 2.8e-16 89.0 98 53.1
TWI14G0595 Tripterygium wilfordii HOM05D003634 ORTHO05D004146 2.8e-16 89.0 98 56.1
CAN.G212.2 Capsicum annuum HOM05D003634 ORTHO05D004146 6.3e-16 87.8 97 55.7
Medtr3g449930 Medicago truncatula HOM05D003634 ORTHO05D004146 6.3e-16 87.8 96 55.2
Aqoxy1G01593 Aquilegia oxysepala HOM05D003634 ORTHO05D004146 8.3e-16 87.4 94 55.3
CANSAT64G2967 Cannabis sativa HOM05D003634 ORTHO05D004146 1.1e-15 87.0 98 57.1
Ca_13941_v3 Cicer arietinum L. HOM05D003634 ORTHO05D004146 1.4e-15 86.7 100 58.0
vmacro08742 Vaccinium macrocarpon HOM05D003634 ORTHO05D004146 1.8e-15 86.3 100 54.0
CDE04G2981 Ceratophyllum demersum HOM05D003634 ORTHO05D004146 2.4e-15 85.9 97 53.6
TWI23G0402 Tripterygium wilfordii HOM05D003634 ORTHO05D004146 3.1e-15 85.5 98 57.1
SGA_v2.0_scaffold49G18386 Striga asiatica HOM05D003634 ORTHO05D004146 4.1e-15 85.1 109 51.4
Gohir.A10G151800 Gossypium hirsutum HOM05D003634 ORTHO05D004146 7.0e-15 84.3 102 55.9
SalBow7G4383 Salvia bowleyana HOM05D003634 ORTHO05D004146 7.0e-15 84.3 97 49.5
Nitab4.5_0006644g0080 Nicotiana tabacum HOM05D003634 ORTHO05D004146 9.1e-15 84.0 104 52.9
PGSC0003DMG400031395 Solanum tuberosum HOM05D003634 ORTHO05D004146 9.1e-15 84.0 68 66.2
Rhsim12G0013500 Rhododendron simsii HOM05D003634 ORTHO05D004146 1.2e-14 83.6 98 54.1
HPP92_015688 Vanilla planifolia HOM05D003634 ORTHO05D004146 1.2e-14 83.6 98 55.1
MD09G1146300 Malus domestica HOM05D003634 ORTHO05D004146 1.6e-14 83.2 99 56.6
MD17G1132900 Malus domestica HOM05D003634 ORTHO05D004146 1.6e-14 83.2 99 56.6
PGR042G1985 Punica granatum HOM05D003634 ORTHO05D004146 1.6e-14 83.2 97 53.6
Nitab4.5_0000019g0250 Nicotiana tabacum HOM05D003634 ORTHO05D004146 2.0e-14 82.8 100 54.0
Lj8C98T13 Lonicera japonica HOM05D003634 ORTHO05D004146 3.5e-14 82.0 101 52.5
Actinidia07505 Actinidia chinensis HOM05D003634 ORTHO05D004146 1.0e-13 80.5 100 52.0
Gohir.D10G114500 Gossypium hirsutum HOM05D003634 ORTHO05D004146 1.0e-13 80.5 102 56.9
unitig_52.g17321 Utricularia gibba HOM05D003634 ORTHO05D004146 1.3e-13 80.1 98 48.0
CAN.G488.26 Capsicum annuum HOM05D003634 ORTHO05D004146 1.7e-13 79.7 91 53.8
Migut.H01272 Erythranthe guttata HOM05D003634 ORTHO05D004146 1.7e-13 79.7 105 51.4
PSO675G5089 Papaver somniferum HOM05D003634 ORTHO05D004146 2.9e-13 79.0 100 55.0
Sc07g0004260 Simmondsia chinensis HOM05D003634 ORTHO05D004146 2.9e-13 79.0 94 52.1
Actinidia12527 Actinidia chinensis HOM05D003634 ORTHO05D004146 5.0e-13 78.2 100 54.0
Lsat_1_v5_gn_3_35220 Lactuca sativa HOM05D003634 ORTHO05D004146 5.0e-13 78.2 96 51.0
PSO541G1729 Papaver somniferum HOM05D003634 ORTHO05D004146 6.5e-13 77.8 100 54.0
THA.LOC104800813 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 6.5e-13 77.8 95 61.1
FvH4_6g38900 Fragaria vesca HOM05D003634 ORTHO05D004146 1.1e-12 77.0 96 53.1
FAN14G5409 Fragaria x ananassa HOM05D003634 ORTHO05D004146 1.1e-12 77.0 96 53.1
HanXRQChr05g0129681 Helianthus annuus HOM05D003634 ORTHO05D004146 2.5e-12 75.9 94 52.1
Medtr5g090410 Medicago truncatula HOM05D003634 ORTHO05D004146 2.5e-12 75.9 94 53.2
ATR0681G398 Amborella trichopoda HOM05D003634 ORTHO05D004146 3.2e-12 75.5 94 50.0
FAN05G3719 Fragaria x ananassa HOM05D003634 ORTHO05D004146 3.2e-12 75.5 96 52.1
Sed0027030 Sechium edule HOM05D003634 ORTHO05D004146 3.2e-12 75.5 99 51.5
FAN02G0185 Fragaria x ananassa HOM05D003634 ORTHO05D004146 4.2e-12 75.1 100 53.0
TPR.G8779 Trifolium pratense HOM05D003634 ORTHO05D004146 4.2e-12 75.1 98 54.1
TPR.G10873 Trifolium pratense HOM05D003634 ORTHO05D004146 5.5e-12 74.7 85 52.9
SEGI_24342 Sequoiadendron giganteum HOM05D003634 ORTHO05D004146 7.2e-12 74.3 64 65.6
FAN09G2615 Fragaria x ananassa HOM05D003634 ORTHO05D004146 9.4e-12 73.9 96 53.1
unitig_578.g16007 Utricularia gibba HOM05D003634 ORTHO05D004146 9.4e-12 73.9 91 53.8
Zm00001eb117670 Zea mays HOM05D003634 ORTHO05D004146 1.6e-11 73.2 96 52.1
Gorai.011G126200 Gossypium raimondii HOM05D003634 ORTHO05D004146 2.1e-11 72.8 102 53.9
HanXRQChr06g0171591 Helianthus annuus HOM05D003634 ORTHO05D004146 3.6e-11 72.0 96 46.9
unitig_8.g4601 Utricularia gibba HOM05D003634 ORTHO05D004146 4.7e-11 71.6 58 63.8
Os07g0141400 Oryza sativa ssp. japonica HOM05D003634 ORTHO05D004146 6.1e-11 71.2 95 54.7
Psat2g018280 Pisum sativum HOM05D003634 ORTHO05D004146 6.1e-11 71.2 95 45.3
Hma1.2p1_0571F.1_g180910 Hydrangea macrophylla HOM05D003634 ORTHO05D004146 1.8e-10 69.7 42 83.3
CsaV3_4G007520 Cucumis sativus L. HOM05D003634 ORTHO05D004146 2.3e-10 69.3 42 83.3
ClCG07G010800 Citrullus lanatus HOM05D003634 ORTHO05D004146 3.0e-10 68.9 42 83.3
MELO3C016190.2 Cucumis melo HOM05D003634 ORTHO05D004146 3.0e-10 68.9 42 83.3
HanXRQChr04g0099261 Helianthus annuus HOM05D003634 ORTHO05D004146 3.0e-10 68.9 97 49.5
ECA246G2888 Erigeron canadensis HOM05D003634 ORTHO05D004146 1.2e-09 67.0 98 45.9
RcHm_v2.0_Chr2g0152481 Rosa chinensis HOM05D003634 ORTHO05D004146 2.0e-09 66.2 97 54.6
ECA234G0286 Erigeron canadensis HOM05D003634 ORTHO05D004146 3.4e-09 65.5 46 69.6
Zm00001eb299760 Zea mays HOM05D003634 ORTHO05D004146 3.7e-08 62.0 93 49.5
AagrBONN_evm.TU.Sc2ySwM_228.465 Anthoceros agrestis HOM05D003634 ORTHO05D004146 2.7e-06 55.8 61 49.2
Mapoly0094s0007 Marchantia polymorpha HOM05D003634 ORTHO05D004146 3.5e-06 55.5 62 51.6


User provided reference genes

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