Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04888 Brassica carinata HOM05D007734 ORTHO05D009807 1.7e-48 195.7 97 100.0
BcaB01g05276 Brassica carinata HOM05D007734 ORTHO05D009807 8.6e-45 183.3 97 94.8
BolC3t13544H Brassica oleracea HOM05D007734 ORTHO05D009807 8.6e-45 183.3 97 94.8
C03p10680 Brassica napus HOM05D007734 ORTHO05D009807 3.3e-44 181.4 97 93.8
BraA03t10238Z Brassica rapa HOM05D007734 ORTHO05D009807 4.7e-43 177.6 97 91.8
Sp6g25520 Schrenkiella parvula HOM05D007734 ORTHO05D009807 9.0e-42 173.3 97 87.6
Carub.0006s1717 Capsella rubella HOM05D007734 ORTHO05D009807 5.8e-41 170.6 97 86.6
Thhalv10015120m.g Eutrema salsugineum HOM05D007734 ORTHO05D009807 1.9e-39 165.6 91 89.0
AT5G18850 Arabidopsis thaliana HOM05D007734 ORTHO05D009807 5.4e-39 164.1 100 82.0
AL6G30210 Arabidopsis lyrata HOM05D007734 ORTHO05D009807 1.0e-37 159.8 98 81.6
CARHR194160 Cardamine hirsuta HOM05D007734 ORTHO05D009807 5.1e-37 157.5 90 86.7
Aa31LG11G10850 Aethionema arabicum HOM05D007734 ORTHO05D009807 2.2e-32 142.1 88 77.3
Migut.G00233 Erythranthe guttata HOM05D007734 ORTHO05D009807 5.3e-26 120.9 91 69.2
Gohir.D10G164200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 5.3e-26 120.9 92 68.5
Gorai.011G183300 Gossypium raimondii HOM05D007734 ORTHO05D009807 5.3e-26 120.9 92 68.5
Thecc.04G274000 Theobroma cacao HOM05D007734 ORTHO05D009807 1.5e-25 119.4 92 65.2
CANSAT78G1562 Cannabis sativa HOM05D007734 ORTHO05D009807 2.0e-25 119.0 92 67.4
Duzib151G0459 Durio zibethinus HOM05D007734 ORTHO05D009807 2.6e-25 118.6 92 65.2
Gohir.A10G104500 Gossypium hirsutum HOM05D007734 ORTHO05D009807 3.4e-25 118.2 92 67.4
Sed0016523 Sechium edule HOM05D007734 ORTHO05D009807 7.6e-25 117.1 92 64.1
ClCG06G005560 Citrullus lanatus HOM05D007734 ORTHO05D009807 1.7e-24 115.9 92 64.1
FAN07G1074 Fragaria x ananassa HOM05D007734 ORTHO05D009807 1.7e-24 115.9 93 61.3
QL06p006592 Quercus lobata HOM05D007734 ORTHO05D009807 1.7e-24 115.9 91 62.6
CiPaw.01G155700 Carya illinoinensis HOM05D007734 ORTHO05D009807 2.9e-24 115.2 91 63.7
CsaV3_6G005600 Cucumis sativus L. HOM05D007734 ORTHO05D009807 3.8e-24 114.8 92 63.0
CiPaw.02G088300 Carya illinoinensis HOM05D007734 ORTHO05D009807 4.9e-24 114.4 92 65.2
MELO3C021378.2 Cucumis melo HOM05D007734 ORTHO05D009807 4.9e-24 114.4 92 63.0
FAN17G2648 Fragaria x ananassa HOM05D007734 ORTHO05D009807 4.9e-24 114.4 93 61.3
Phvul.003G099200 Phaseolus vulgaris HOM05D007734 ORTHO05D009807 4.9e-24 114.4 93 61.3
Lj4g0025137 Lotus japonicus HOM05D007734 ORTHO05D009807 8.4e-24 113.6 90 65.6
arahy.Tifrunner.gnm1.ann1.F9B3QK Arachis hypogaea HOM05D007734 ORTHO05D009807 1.1e-23 113.2 91 64.8
Glyma.17G021500 Glycine max HOM05D007734 ORTHO05D009807 1.1e-23 113.2 93 60.2
Gorai.006G074800 Gossypium raimondii HOM05D007734 ORTHO05D009807 1.1e-23 113.2 92 64.1
Duzib052G0038 Durio zibethinus HOM05D007734 ORTHO05D009807 1.4e-23 112.8 92 65.2
Glyma.07G252900 Glycine max HOM05D007734 ORTHO05D009807 1.4e-23 112.8 73 74.0
RcHm_v2.0_Chr4g0420431 Rosa chinensis HOM05D007734 ORTHO05D009807 1.4e-23 112.8 93 61.3
SGA_v2.0_scaffold142G35667 Striga asiatica HOM05D007734 ORTHO05D009807 1.4e-23 112.8 91 60.4
Atru.chr4.2717 Acer truncatum HOM05D007734 ORTHO05D009807 1.9e-23 112.5 92 58.7
Gohir.D09G060100 Gossypium hirsutum HOM05D007734 ORTHO05D009807 1.9e-23 112.5 92 64.1
FvH4_4g16860 Fragaria vesca HOM05D007734 ORTHO05D009807 3.2e-23 111.7 92 59.8
FAN12G0936 Fragaria x ananassa HOM05D007734 ORTHO05D009807 3.2e-23 111.7 92 59.8
FAN12G2573 Fragaria x ananassa HOM05D007734 ORTHO05D009807 3.2e-23 111.7 92 59.8
Peaxi162Scf00095g00125 Petunia axillaris HOM05D007734 ORTHO05D009807 3.2e-23 111.7 84 65.5
GSVIVG01017837001 Vitis vinifera HOM05D007734 ORTHO05D009807 3.2e-23 111.7 91 60.4
arahy.Tifrunner.gnm1.ann1.80YKV9 Arachis hypogaea HOM05D007734 ORTHO05D009807 5.5e-23 110.9 91 63.7
TWI73G0877 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 9.3e-23 110.2 92 62.0
Eucgr.H03661 Eucalyptus grandis HOM05D007734 ORTHO05D009807 1.2e-22 109.8 91 59.3
Haze_01029 Corylus avellana HOM05D007734 ORTHO05D009807 2.1e-22 109.0 73 71.2
MD16G1177900 Malus domestica HOM05D007734 ORTHO05D009807 2.1e-22 109.0 92 59.8
TWI09G1295 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 2.1e-22 109.0 92 64.1
PSO302G0168 Papaver somniferum HOM05D007734 ORTHO05D009807 3.5e-22 108.2 86 57.0
THA.LOC104818832 Tarenaya hassleriana HOM05D002550 ORTHO05D003420 3.5e-22 108.2 81 64.2
MD13G1176100 Malus domestica HOM05D007734 ORTHO05D009807 4.6e-22 107.8 73 72.6
Sed0021110 Sechium edule HOM05D007734 ORTHO05D009807 4.6e-22 107.8 91 60.4
Gohir.A09G061200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 6.0e-22 107.5 92 62.0
Cfa015520 Carpinus fangiana HOM05D007734 ORTHO05D009807 7.9e-22 107.1 66 72.7
Ca_30429_v3 Cicer arietinum L. HOM05D007734 ORTHO05D009807 7.9e-22 107.1 91 62.6
Hma1.2p1_0643F.1_g194590 Hydrangea macrophylla HOM05D007734 ORTHO05D009807 1.0e-21 106.7 73 71.2
Sopen01g032410 Solanum pennellii HOM05D007734 ORTHO05D009807 1.0e-21 106.7 84 60.7
Solyc01g080590.3 Solanum lycopersicum HOM05D007734 ORTHO05D009807 1.3e-21 106.3 84 60.7
PGSC0003DMG400032093 Solanum tuberosum HOM05D007734 ORTHO05D009807 1.8e-21 105.9 84 60.7
Ciclev10007097m.g Citrus clementina HOM05D007734 ORTHO05D009807 2.3e-21 105.5 92 55.4
Prupe.1G145200 Prunus persica HOM05D007734 ORTHO05D009807 3.9e-21 104.8 73 69.9
Oeu044804.1 Olea europaea HOM05D007734 ORTHO05D009807 5.1e-21 104.4 91 60.4
Manes.03G189200 Manihot esculenta HOM05D007734 ORTHO05D009807 1.1e-20 103.2 85 60.0
CAN.G627.13 Capsicum annuum HOM05D007734 ORTHO05D009807 1.9e-20 102.4 84 61.9
Nn4g26101 Nelumbo nucifera HOM05D007734 ORTHO05D009807 3.3e-20 101.7 85 57.6
Nitab4.5_0009396g0030 Nicotiana tabacum HOM05D007734 ORTHO05D009807 4.3e-20 101.3 66 72.7
Potri.010G026900 Populus trichocarpa HOM05D007734 ORTHO05D009807 5.6e-20 100.9 84 61.9
CSS0028590 Camellia sinensis var. sinensis HOM05D007734 ORTHO05D009807 1.3e-19 99.8 86 59.3
TAR365G0453 Trochodendron aralioides HOM05D007734 ORTHO05D009807 1.6e-19 99.4 97 54.6
Dinv44448 Davidia involucrata HOM05D007734 ORTHO05D009807 2.1e-19 99.0 87 58.6
CDE05G0384 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 2.8e-19 98.6 91 57.1
Sabra08G0163100 Salix brachista HOM05D007734 ORTHO05D009807 2.8e-19 98.6 67 67.2
MSTRG.3964 Avicennia marina HOM05D007734 ORTHO05D009807 4.8e-19 97.8 107 54.2
Potri.008G197300 Populus trichocarpa HOM05D007734 ORTHO05D009807 4.8e-19 97.8 73 65.8
A03p09150 Brassica napus HOM05D007734 ORTHO05D009807 6.2e-19 97.4 51 94.1
MBI19_g13511_MAGBIO Magnolia biondii HOM05D007734 ORTHO05D009807 1.1e-18 96.7 86 53.5
Lalb_Chr07g0177521 Lupinus albus HOM05D007734 ORTHO05D009807 9.0e-18 93.6 64 68.8
ATR0487G018 Amborella trichopoda HOM05D007734 ORTHO05D009807 1.2e-17 93.2 89 51.7
Actinidia40206 Actinidia chinensis HOM05D007734 ORTHO05D009807 1.5e-17 92.8 84 54.8
CDE05G0036 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 2.0e-17 92.4 67 67.2
Cc03_g02610 Coffea canephora HOM05D007734 ORTHO05D009807 2.6e-17 92.0 66 66.7
Psat4g030040 Pisum sativum HOM05D007734 ORTHO05D009807 3.4e-17 91.7 66 66.7
A10p20780 Brassica napus HOM05D007734 ORTHO05D009807 7.9e-14 80.5 50 78.0
SEGI_32711 Sequoiadendron giganteum HOM05D007734 ORTHO05D009807 1.0e-13 80.1 96 39.6
BcaB08g36639 Brassica carinata HOM05D007734 ORTHO05D009807 2.3e-13 79.0 43 86.0
Aqoxy5G00589 Aquilegia oxysepala HOM05D007734 ORTHO05D009807 2.8e-11 72.0 80 46.2
Sc13g0003750 Simmondsia chinensis HOM05D007734 ORTHO05D009807 8.2e-11 70.5 51 62.7
Nitab4.5_0000059g0330 Nicotiana tabacum HOM05D007734 ORTHO05D009807 4.5e-09 64.7 54 57.4
FAN22G2010 Fragaria x ananassa HOM05D007734 ORTHO05D001690 7.6e-09 63.9 50 60.0
Actinidia00065 Actinidia chinensis HOM05D007734 ORTHO05D009807 7.9e-06 53.9 70 44.3


User provided reference genes

Program Settings