Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.1e-188 663.3 358 100.0
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 7.1e-185 650.6 327 99.1
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 3.5e-184 648.3 327 98.8
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.7e-183 646.0 327 98.5
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.3e-178 629.8 326 96.0
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 1.7e-178 629.4 319 98.7
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 6.4e-178 627.5 329 95.1
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.1e-177 626.7 328 95.4
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 1.1e-177 626.7 326 95.1
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 1.4e-177 626.3 328 95.4
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 1.6e-173 612.8 326 93.6
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 3.6e-173 611.7 327 93.0
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 6.9e-172 607.4 310 98.4
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.6e-171 605.5 327 93.0
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 2.6e-171 605.5 327 93.0
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 4.4e-171 604.7 327 93.0
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 9.9e-171 603.6 328 93.3
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 8.4e-170 600.5 328 93.0
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 7.1e-169 597.4 337 89.0
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 2.6e-163 578.9 327 88.4
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.8e-162 575.1 336 86.3
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 3.2e-153 545.4 327 81.7
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.1e-152 542.7 327 81.3
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 1.0e-151 540.4 326 81.3
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.3e-151 540.0 326 80.7
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 2.3e-151 539.3 327 80.4
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.9e-151 538.5 327 81.7
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.3e-150 535.4 306 85.9
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 4.3e-150 535.0 327 79.8
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.1e-149 532.7 332 80.1
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 8.2e-149 530.8 332 80.1
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.8e-148 529.6 327 80.7
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 2.4e-148 529.3 325 79.1
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.0e-148 528.5 327 79.5
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 6.9e-148 527.7 325 79.4
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 6.9e-148 527.7 332 79.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 2.0e-147 526.2 326 79.4
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 2.6e-147 525.8 327 78.3
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 3.4e-147 525.4 325 79.1
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 3.4e-147 525.4 326 80.4
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.4e-147 525.4 327 79.2
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 3.4e-147 525.4 341 78.0
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 4.5e-147 525.0 327 80.4
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.5e-147 525.0 326 79.1
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 4.5e-147 525.0 325 78.5
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 5.8e-147 524.6 327 79.2
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.0e-146 523.9 327 78.9
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.2e-146 522.7 324 79.3
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 3.8e-146 521.9 324 79.6
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 4.9e-146 521.5 328 79.0
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.4e-145 520.0 327 79.2
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 4.2e-145 518.5 326 77.9
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.1e-145 517.7 326 77.9
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 9.3e-145 517.3 325 80.0
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.7e-144 515.8 323 78.9
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 2.3e-143 512.7 327 75.8
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.5e-142 510.0 328 77.4
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 5.7e-142 508.1 327 75.2
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 9.7e-142 507.3 304 80.9
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.3e-141 506.9 320 80.3
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 2.2e-141 506.1 328 78.0
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.2e-141 506.1 328 76.8
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 3.7e-141 505.4 326 76.4
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 4.8e-141 505.0 327 77.7
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.1e-140 503.8 327 76.8
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 1.8e-140 503.1 328 76.5
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 5.3e-140 501.5 324 76.5
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 6.9e-140 501.1 308 78.6
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 6.9e-140 501.1 333 75.7
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 9.0e-140 500.7 293 83.3
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.5e-139 500.0 327 77.1
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 1.5e-139 500.0 327 76.1
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 3.4e-139 498.8 327 75.8
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 5.0e-138 495.0 403 64.5
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.5e-138 494.6 327 73.7
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 6.5e-138 494.6 367 67.8
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 6.5e-138 494.6 308 77.9
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 8.5e-138 494.2 327 76.1
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 1.1e-137 493.8 327 76.1
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.4e-137 493.4 326 77.0
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.4e-137 493.4 328 76.5
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 5.5e-137 491.5 327 76.1
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.2e-136 490.3 327 76.1
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.1e-136 489.6 333 72.7
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 2.1e-136 489.6 333 72.7
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 4.6e-136 488.4 329 73.9
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 6.1e-136 488.0 330 73.6
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.0e-135 487.3 291 82.1
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 3.9e-135 485.3 323 76.5
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.1e-135 485.0 327 75.2
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.5e-134 483.4 306 78.1
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 1.5e-134 483.4 306 76.5
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 5.7e-134 481.5 315 74.9
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 6.3e-133 478.0 284 79.9
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 6.9e-132 474.6 327 73.4
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.4e-129 466.8 268 84.0
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.2e-129 465.7 327 71.3
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.2e-128 463.8 287 77.0
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.1e-128 463.0 310 72.6
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 7.9e-128 461.1 299 74.9
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 3.9e-127 458.8 272 80.5
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 8.2e-125 451.1 327 70.9
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.0e-122 444.1 270 78.5
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.8e-122 442.2 281 77.9
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 6.5e-122 441.4 298 74.5
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.1e-121 440.7 319 71.8
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.4e-121 440.3 343 67.6
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 3.7e-117 425.6 316 69.9
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.8e-116 423.3 286 70.6
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.0e-115 419.9 283 70.3
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.9e-114 416.0 272 72.8
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.9e-114 416.0 302 71.5
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.9e-113 413.3 287 70.7
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 5.2e-111 405.2 262 77.1
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.7e-110 401.7 280 72.5
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.2e-109 399.8 274 74.1
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 1.2e-104 384.0 256 75.0
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 3.1e-100 369.4 284 68.3
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.4e-95 354.0 320 59.4
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.9e-90 336.3 228 73.7
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.8e-84 317.0 220 74.5
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.2e-83 314.3 220 74.5
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 4.9e-61 239.2 153 72.5
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 6.4e-61 238.8 329 45.3
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.2e-60 236.1 139 79.1
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.3e-58 231.1 139 80.6
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.3e-57 226.5 171 69.0
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 8.1e-56 221.9 148 77.0
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.6e-51 207.6 132 72.7
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 8.1e-48 195.3 108 82.4
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 9.9e-46 188.3 108 77.8
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 7.1e-36 155.6 272 40.8
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 9.3e-36 155.2 129 57.4
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 8.7e-34 148.7 308 33.8
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.5e-33 147.9 112 63.4
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 6.5e-29 132.5 117 57.3
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.7e-27 127.1 194 44.3
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 2.2e-24 117.5 296 33.1
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 5.3e-23 112.8 86 64.0
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.0e-22 110.9 71 74.6
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.0e-21 108.6 91 65.9
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.7e-21 107.8 93 66.7
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.2e-21 107.5 84 60.7
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 1.4e-18 98.2 53 92.5
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 1.1e-15 88.6 52 80.8
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.1e-15 88.6 53 73.6
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 1.4e-15 88.2 78 53.8
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-13 81.6 53 73.6
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 5.1e-10 69.7 40 77.5
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.2e-06 58.5 38 78.9
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.5e-06 58.2 31 83.9
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 5.9e-06 56.2 50 58.0
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 7.7e-06 55.8 29 79.3


User provided reference genes

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