Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 1.2e-206 723.0 370 100.0
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 5.2e-191 671.0 371 91.9
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 6.8e-191 670.6 370 93.0
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 1.5e-190 669.5 371 91.9
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 2.0e-190 669.1 370 92.7
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 3.4e-190 668.3 385 90.4
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 9.8e-190 666.8 362 94.8
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 1.4e-188 662.9 373 90.6
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-186 656.4 379 89.7
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 7.3e-185 650.6 373 90.1
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 3.1e-183 645.2 371 90.0
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 3.1e-183 645.2 371 89.2
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 1.4e-180 636.3 371 89.2
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 6.8e-175 617.5 377 84.4
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 5.8e-166 587.8 322 93.2
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 9.3e-164 580.5 322 91.6
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 9.3e-164 580.5 322 91.6
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 6.0e-163 577.8 320 91.6
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 1.1e-161 573.5 322 91.0
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.4e-159 566.6 315 91.4
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 1.2e-155 553.5 388 75.0
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 3.9e-146 521.9 366 78.4
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 5.3e-143 511.5 380 75.5
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 1.9e-140 503.1 382 70.7
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 1.9e-140 503.1 380 68.2
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 5.5e-140 501.5 380 69.5
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 7.1e-140 501.1 385 67.8
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 7.9e-139 497.7 377 69.2
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 5.1e-138 495.0 353 72.0
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 5.1e-138 495.0 379 69.7
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 8.7e-138 494.2 357 71.1
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 1.1e-137 493.8 379 69.4
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 1.1e-137 493.8 375 68.0
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 1.5e-137 493.4 377 69.0
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 3.3e-137 492.3 357 71.4
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 4.3e-137 491.9 376 68.4
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 5.7e-137 491.5 394 66.8
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 7.4e-137 491.1 387 67.2
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 7.4e-137 491.1 357 71.4
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.6e-136 490.0 379 68.9
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 2.2e-136 489.6 374 68.2
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 2.2e-136 489.6 381 67.5
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 3.7e-136 488.8 257 95.7
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 6.3e-136 488.0 387 66.9
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 5.3e-135 485.0 357 69.7
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 1.5e-134 483.4 360 68.6
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 3.4e-134 482.3 367 68.1
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.0e-133 480.7 374 66.3
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.3e-133 480.3 361 69.8
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 1.7e-133 479.9 380 67.4
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.7e-133 479.9 352 69.9
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 2.2e-133 479.6 381 66.9
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 2.2e-133 479.6 358 69.6
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 3.8e-133 478.8 312 76.3
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 5.0e-133 478.4 356 68.3
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 5.0e-133 478.4 361 69.5
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 5.0e-133 478.4 353 69.4
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 8.5e-133 477.6 355 69.9
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.9e-132 476.5 413 62.2
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 3.2e-132 475.7 360 69.4
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 5.5e-132 474.9 360 69.7
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 1.6e-131 473.4 357 68.3
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 1.6e-131 473.4 359 67.4
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 3.6e-131 472.2 359 67.7
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 7.9e-131 471.1 353 68.6
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 2.3e-130 469.5 360 66.1
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 2.3e-130 469.5 321 73.8
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 2.5e-129 466.1 365 66.3
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 2.5e-129 466.1 371 66.3
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 7.4e-129 464.5 364 67.0
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 7.4e-129 464.5 412 61.7
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 9.7e-129 464.2 351 67.8
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 1.3e-128 463.8 314 72.9
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 2.2e-128 463.0 314 73.2
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 3.7e-128 462.2 359 67.1
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.7e-128 462.2 379 65.2
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 4.8e-128 461.8 359 67.7
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 4.8e-128 461.8 314 73.6
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.4e-127 460.3 317 71.9
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 9.1e-127 457.6 355 65.9
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 2.6e-126 456.1 366 65.3
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 1.3e-125 453.8 314 73.6
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.7e-125 453.4 317 72.6
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 1.7e-125 453.4 317 72.2
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 3.2e-124 449.1 370 64.3
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 2.1e-123 446.4 359 64.6
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 2.1e-123 446.4 318 70.4
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 2.7e-123 446.0 394 60.4
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 4.7e-123 445.3 354 67.5
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 1.4e-122 443.7 317 69.1
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 3.0e-122 442.6 359 64.1
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 3.9e-122 442.2 350 64.9
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 3.9e-122 442.2 370 62.7
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 8.8e-122 441.0 380 63.9
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.1e-121 440.7 377 62.6
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 1.5e-121 440.3 372 62.4
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 3.3e-121 439.1 428 57.9
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 7.4e-121 438.0 292 75.3
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 2.8e-120 436.0 290 75.5
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 1.2e-118 430.6 373 63.5
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 1.5e-116 423.7 284 74.6
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 2.1e-115 419.9 321 67.3
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 4.7e-115 418.7 351 65.2
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 2.3e-114 416.4 313 68.4
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 1.2e-107 394.0 250 76.8
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.6e-107 393.7 255 75.3
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 9.1e-103 377.9 257 74.3
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 4.5e-102 375.6 317 60.6
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 1.7e-101 373.6 306 59.8
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 3.5e-94 349.4 299 59.9
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 1.0e-93 347.8 328 54.3
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 1.2e-89 334.3 385 53.2
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 2.0e-89 333.6 379 51.5
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 5.7e-89 332.0 243 70.0
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 7.3e-84 315.1 309 56.0
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 2.6e-81 306.6 283 55.5
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 7.5e-81 305.1 324 52.2
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.3e-80 304.3 387 47.8
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 8.3e-80 301.6 198 75.3
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.6e-73 280.0 268 57.1
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 2.4e-71 273.5 201 70.1
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.6e-67 260.8 179 72.6
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.9e-64 250.0 371 39.6
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 1.4e-63 247.7 169 74.6
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 5.4e-63 245.7 190 65.3
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 3.3e-60 236.5 350 40.0
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 4.3e-60 236.1 189 64.0
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 2.4e-58 230.3 201 62.2
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 1.3e-56 224.6 168 67.3
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.4e-55 221.1 203 58.6
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 4.6e-54 216.1 357 38.9
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.0e-53 214.9 172 65.7
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.0e-49 200.7 133 72.9
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.9e-48 196.8 176 60.2
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 2.7e-46 190.3 288 37.8
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 2.3e-45 187.2 168 60.7
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 3.0e-45 186.8 272 40.8
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 5.6e-44 182.6 141 63.1
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 4.2e-39 166.4 363 32.8
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 2.0e-33 147.5 125 61.6
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.6e-33 147.1 129 58.1
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 9.3e-31 138.7 162 50.0
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 2.6e-25 120.6 94 69.1
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 2.7e-22 110.5 87 66.7
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.3e-21 107.5 315 31.4
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 3.3e-20 103.6 79 64.6
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 2.2e-19 100.9 67 71.6
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 5.1e-13 79.7 71 57.7
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 5.0e-08 63.2 47 66.0
A10p20470 Brassica napus HOM05D004989 ORTHO05D039594 3.2e-07 60.5 42 73.8


User provided reference genes

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