Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 3.5e-77 291.6 151 100.0
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 1.5e-64 249.6 153 88.9
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 3.4e-64 248.4 153 88.2
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 3.4e-64 248.4 153 88.2
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 5.8e-64 247.7 153 88.2
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 5.8e-64 247.7 153 88.2
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 5.4e-62 241.1 151 85.4
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 1.4e-57 226.5 151 82.1
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 2.0e-56 222.6 151 80.8
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 2.0e-56 222.6 151 80.8
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 4.5e-56 221.5 151 81.5
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 7.6e-56 220.7 151 80.1
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 3.8e-55 218.4 151 79.5
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 1.2e-53 213.4 151 80.8
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 1.2e-53 213.4 151 80.8
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 1.2e-53 213.4 151 80.8
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 1.5e-51 206.5 151 78.8
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.8e-49 199.5 153 72.5
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 3.4e-48 195.3 153 76.5
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 3.0e-44 182.2 154 70.8
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 3.9e-44 181.8 153 69.9
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 2.5e-43 179.1 155 72.9
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 9.0e-41 170.6 153 69.3
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 9.4e-30 134.0 155 60.6
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 2.3e-28 129.4 165 57.0
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 2.8e-26 122.5 168 53.6
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 4.8e-26 121.7 166 54.8
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 8.2e-26 120.9 163 50.9
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 8.2e-26 120.9 163 54.6
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 2.4e-25 119.4 164 51.2
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 3.1e-25 119.0 165 53.9
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 6.9e-25 117.9 163 51.5
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 6.9e-25 117.9 163 51.5
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 9.1e-25 117.5 164 53.7
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 9.1e-25 117.5 165 50.9
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 3.4e-24 115.5 165 50.3
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.7e-23 113.2 165 51.5
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 4.2e-22 108.6 158 50.0
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 2.1e-21 106.3 164 48.8
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 2.3e-20 102.8 164 47.0
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 2.3e-20 102.8 164 47.0
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 6.7e-20 101.3 165 47.3
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 6.3e-18 94.7 159 45.3
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 8.2e-18 94.4 164 43.9
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 5.3e-17 91.7 164 43.9
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 5.3e-17 91.7 164 43.9
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 6.5e-15 84.7 152 44.7
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 3.6e-13 79.0 112 48.2
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 3.0e-12 75.9 96 52.1
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 1.2e-11 73.9 126 42.1
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 2.0e-11 73.2 125 48.0
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 2.6e-11 72.8 114 46.5
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 5.7e-11 71.6 113 47.8
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 9.7e-11 70.9 101 46.5
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 9.7e-11 70.9 102 47.1
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.3e-10 70.5 115 45.2
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 1.7e-10 70.1 107 42.1
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 2.8e-10 69.3 98 45.9
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 4.8e-10 68.6 98 45.9
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 4.8e-10 68.6 113 43.4
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 6.3e-10 68.2 101 44.6
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 8.2e-10 67.8 115 44.3
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.1e-09 67.4 115 44.3
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 1.8e-09 66.6 129 40.3
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 1.8e-09 66.6 97 49.5
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 2.4e-09 66.2 117 41.9
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 3.1e-09 65.9 114 42.1
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 4.1e-09 65.5 136 39.0
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 4.1e-09 65.5 96 42.7
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 4.1e-09 65.5 96 50.0
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 4.1e-09 65.5 99 49.5
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 7.0e-09 64.7 116 44.0
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 9.1e-09 64.3 117 43.6
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 9.1e-09 64.3 105 45.7
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 1.2e-08 63.9 106 43.4
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 1.6e-08 63.5 81 50.6
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 2.0e-08 63.2 127 37.8
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 2.0e-08 63.2 104 38.5
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 2.0e-08 63.2 98 41.8
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 2.7e-08 62.8 98 44.9
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 4.5e-08 62.0 130 42.3
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 5.9e-08 61.6 81 51.9
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 5.9e-08 61.6 81 51.9
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 5.9e-08 61.6 96 43.8
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 5.9e-08 61.6 120 40.8
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 7.7e-08 61.2 103 46.6
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 1.0e-07 60.8 102 47.1
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 1.0e-07 60.8 117 38.5
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 1.0e-07 60.8 110 43.6
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 1.3e-07 60.5 132 40.2
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 1.3e-07 60.5 105 42.9
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 1.3e-07 60.5 98 39.8
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 1.3e-07 60.5 105 44.8
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 1.3e-07 60.5 99 39.4
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.7e-07 60.1 110 41.8
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 1.7e-07 60.1 99 40.4
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 2.2e-07 59.7 115 38.3
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 2.2e-07 59.7 114 43.0
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 2.9e-07 59.3 115 43.5
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 5.0e-07 58.5 111 45.0
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 5.0e-07 58.5 118 40.7
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 6.5e-07 58.2 95 41.1
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 6.5e-07 58.2 99 40.4
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 6.5e-07 58.2 112 42.0
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 8.5e-07 57.8 98 38.8
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 8.5e-07 57.8 106 41.5
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 1.1e-06 57.4 137 40.9
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 1.5e-06 57.0 128 35.9
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 1.5e-06 57.0 128 35.9
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 1.5e-06 57.0 111 41.4
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 1.5e-06 57.0 102 39.2
Sc19g0004420 Simmondsia chinensis HOM05D004695 ORTHO05D005372 1.5e-06 57.0 101 44.6
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 1.9e-06 56.6 110 40.0
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 2.5e-06 56.2 133 38.3
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 4.2e-06 55.5 96 42.7
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 4.2e-06 55.5 128 35.2
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 7.2e-06 54.7 112 38.4
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 7.2e-06 54.7 111 36.9
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 9.4e-06 54.3 102 42.2


User provided reference genes

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