Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 6.9e-125 450.7 229 100.0
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.3e-120 436.4 229 96.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 8.7e-120 433.7 229 96.1
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 2.0e-116 422.5 228 94.3
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 2.0e-116 422.5 228 94.3
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 7.4e-111 404.1 228 88.6
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.1e-109 400.2 228 89.5
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 1.8e-109 399.4 226 87.2
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 3.1e-109 398.7 227 88.5
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 6.9e-109 397.5 228 87.7
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 6.9e-109 397.5 227 88.1
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 7.4e-103 377.5 227 85.5
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 6.2e-102 374.4 226 80.5
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 1.0e-96 357.1 228 79.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 5.9e-92 341.3 226 78.8
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 2.9e-91 339.0 224 73.2
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 6.5e-91 337.8 224 72.3
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 7.2e-90 334.3 224 71.4
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 7.2e-90 334.3 228 71.5
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 6.1e-89 331.3 229 71.2
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 6.7e-88 327.8 224 70.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 6.7e-88 327.8 223 72.6
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 8.8e-88 327.4 226 72.6
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.1e-87 327.0 224 72.3
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.0e-87 326.2 221 71.5
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.0e-87 326.2 224 71.0
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.3e-87 325.5 224 71.0
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 3.3e-87 325.5 221 71.0
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 4.3e-87 325.1 224 71.9
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 5.7e-87 324.7 226 70.4
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 7.4e-87 324.3 224 71.4
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.3e-86 323.6 224 70.5
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.7e-86 323.2 212 73.6
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.8e-86 322.4 224 70.1
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.8e-86 322.4 223 69.5
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.7e-86 322.0 220 71.8
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 4.8e-86 321.6 224 70.1
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 4.8e-86 321.6 224 70.1
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 4.8e-86 321.6 224 70.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 6.3e-86 321.2 224 68.8
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 6.3e-86 321.2 226 69.5
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 8.2e-86 320.9 224 70.1
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.1e-85 320.5 224 70.5
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.1e-85 320.5 224 69.2
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.1e-85 320.5 224 69.2
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 4.1e-85 318.5 224 70.1
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 4.1e-85 318.5 221 69.7
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 5.3e-85 318.2 223 69.1
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 6.9e-85 317.8 224 69.6
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 9.1e-85 317.4 215 73.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 4.5e-84 315.1 212 72.6
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 4.5e-84 315.1 227 67.4
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 4.5e-84 315.1 224 68.8
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 1.0e-83 313.9 225 65.8
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.3e-83 313.5 221 70.6
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 5.0e-83 311.6 224 70.1
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 5.0e-83 311.6 224 67.9
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 6.5e-83 311.2 229 66.8
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 6.5e-83 311.2 218 68.8
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 6.5e-83 311.2 229 66.8
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 8.5e-83 310.8 221 69.2
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.4e-82 310.1 225 67.1
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 1.9e-82 309.7 227 66.5
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.5e-82 309.3 221 67.9
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.5e-82 309.3 224 69.6
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.5e-82 309.3 219 68.9
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 3.2e-82 308.9 220 67.3
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 3.2e-82 308.9 227 69.2
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 5.5e-82 308.1 224 67.4
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 5.5e-82 308.1 229 66.8
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 9.4e-82 307.4 230 65.7
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 9.4e-82 307.4 220 68.2
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.2e-81 307.0 221 67.9
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.6e-81 306.6 223 68.2
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 2.7e-81 305.8 248 61.7
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.6e-81 305.4 224 69.2
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.6e-81 305.4 224 66.5
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 3.6e-81 305.4 226 66.8
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.8e-80 303.1 223 68.2
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.8e-80 303.1 231 61.9
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 3.0e-80 302.4 220 66.8
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.9e-80 302.0 231 62.3
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 3.9e-80 302.0 231 62.3
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 8.8e-80 300.8 224 66.1
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 8.8e-80 300.8 224 66.5
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 8.8e-80 300.8 224 66.5
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.1e-79 300.4 222 64.4
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.5e-79 300.1 228 62.3
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 5.7e-79 298.1 221 67.0
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.7e-79 298.1 227 61.2
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 9.7e-79 297.4 229 66.8
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.8e-78 295.8 220 66.4
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 2.8e-78 295.8 212 63.7
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 3.7e-78 295.4 224 64.3
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 6.3e-78 294.7 220 66.8
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 8.2e-78 294.3 227 64.8
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 3.1e-77 292.4 220 65.5
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 5.3e-77 291.6 223 66.4
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.5e-76 290.0 223 63.2
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 2.0e-76 289.7 325 51.1
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 4.5e-76 288.5 221 63.8
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.7e-75 286.6 219 63.9
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.2e-75 286.2 219 63.5
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 3.8e-75 285.4 220 63.2
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 5.0e-75 285.0 221 62.9
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.0e-75 285.0 221 62.9
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.4e-74 283.5 219 62.6
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.2e-74 282.3 219 63.0
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 3.2e-74 282.3 224 61.2
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 9.4e-74 280.8 226 62.4
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.7e-73 279.3 219 62.1
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 3.9e-72 275.4 227 59.0
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.1e-71 273.9 227 58.6
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.5e-71 273.5 152 91.4
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 2.0e-71 273.1 219 60.3
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.6e-71 272.7 220 60.9
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 3.3e-71 272.3 356 44.9
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 3.3e-71 272.3 308 50.0
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 4.4e-71 271.9 226 61.1
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 5.7e-71 271.6 216 62.5
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.7e-70 268.9 221 58.8
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 3.5e-68 262.3 220 58.2
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.0e-67 260.8 152 88.2
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.7e-62 243.4 152 77.6
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.2e-60 237.3 173 69.4
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.6e-60 236.9 227 53.3
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 8.5e-59 231.1 152 71.1
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 8.3e-54 214.5 176 63.1
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.3e-51 207.2 111 91.9
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.3e-51 207.2 111 91.9
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.2e-49 200.7 124 79.0
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.0e-48 197.6 143 66.4
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 2.3e-48 196.4 129 72.9
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 6.8e-48 194.9 167 59.3
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 3.7e-46 189.1 193 53.9
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 7.8e-44 181.4 107 81.3
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 2.8e-41 172.9 223 44.4
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 6.1e-41 171.8 99 80.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 5.4e-37 158.7 95 78.9
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 2.5e-34 149.8 114 64.0
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 5.6e-34 148.7 119 63.9
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.6e-34 148.7 115 60.0
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 3.6e-33 146.0 191 40.8
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.4e-32 144.1 117 63.2
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 5.4e-29 132.1 142 46.5
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 2.3e-27 126.7 83 72.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.0e-23 113.6 105 58.1
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 5.8e-23 112.1 128 52.3
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 4.6e-20 102.4 81 61.7
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 1.3e-14 84.3 55 74.5
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.0e-11 74.7 60 60.0
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.3e-10 69.3 83 41.0
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 2.0e-07 60.5 47 61.7


User provided reference genes

Program Settings