Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 6.4e-114 414.1 205 100.0
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 6.4e-114 414.1 205 100.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 3.2e-113 411.8 205 99.5
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 4.1e-113 411.4 205 99.0
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 3.3e-110 401.7 219 92.7
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-103 380.2 208 92.3
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 8.6e-103 377.1 205 91.2
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 7.3e-102 374.0 205 90.2
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.0e-99 365.9 209 87.6
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 2.6e-99 365.5 216 85.6
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 7.6e-99 364.0 227 82.4
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 3.8e-98 361.7 214 85.5
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.8e-92 342.8 208 82.7
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 6.9e-92 340.9 203 82.3
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 8.9e-92 340.5 208 82.2
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 9.6e-86 320.5 186 84.4
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 3.8e-82 308.5 207 75.4
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.1e-80 302.8 208 75.0
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.8e-79 299.7 214 70.6
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 9.3e-73 277.3 229 62.4
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.3e-71 273.5 226 61.5
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.3e-71 272.7 228 62.3
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.3e-71 272.7 228 62.3
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.3e-71 272.7 228 62.3
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.1e-71 271.6 218 66.1
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.9e-70 269.6 227 61.2
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-69 266.9 198 75.3
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 8.1e-69 264.2 228 61.0
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.1e-68 263.8 208 69.7
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.4e-68 262.7 223 60.1
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.4e-68 262.7 223 60.1
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 3.1e-68 262.3 226 58.8
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.0e-68 261.9 217 61.8
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 4.0e-68 261.9 220 60.9
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 5.3e-68 261.5 211 63.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.3e-68 261.5 217 61.8
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 6.9e-68 261.2 226 59.7
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 9.0e-68 260.8 226 60.2
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.2e-67 260.4 230 58.7
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.2e-67 260.4 223 59.6
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 2.0e-67 259.6 223 59.2
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.0e-67 259.6 223 59.6
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.0e-67 259.6 226 59.7
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.4e-67 258.8 217 61.8
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 4.5e-67 258.5 219 61.2
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 4.5e-67 258.5 212 69.3
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 4.5e-67 258.5 212 69.3
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 4.5e-67 258.5 227 59.5
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 4.5e-67 258.5 227 59.9
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 7.6e-67 257.7 223 59.2
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.3e-66 256.9 224 58.0
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.3e-66 256.9 224 57.6
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.7e-66 256.5 216 58.3
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 2.2e-66 256.1 229 59.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 2.9e-66 255.8 229 56.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 2.9e-66 255.8 219 59.4
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 6.5e-66 254.6 227 59.9
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 8.4e-66 254.2 222 59.0
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 2.5e-65 252.7 225 58.2
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.5e-65 252.7 213 60.1
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.5e-65 252.7 226 57.1
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 3.2e-65 252.3 226 57.1
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 5.5e-65 251.5 226 56.6
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 7.1e-65 251.1 222 56.3
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 9.3e-65 250.8 227 58.1
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.2e-64 250.4 223 55.6
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 3.5e-64 248.8 225 57.3
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 3.5e-64 248.8 226 56.2
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 4.6e-64 248.4 226 57.1
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.6e-64 248.4 226 57.1
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 6.0e-64 248.1 217 59.4
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 7.9e-64 247.7 226 58.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.3e-63 246.9 223 55.6
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 3.0e-63 245.7 236 55.5
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 5.1e-63 245.0 227 59.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.7e-63 244.6 221 56.6
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 8.7e-63 244.2 228 57.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.5e-62 243.4 211 57.8
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 3.3e-62 242.3 215 58.1
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.3e-62 241.9 217 57.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 4.3e-62 241.9 222 58.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.7e-62 241.5 214 57.9
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.3e-61 240.4 227 58.1
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.3e-61 240.4 223 55.2
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 3.7e-61 238.8 219 56.2
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 6.3e-61 238.0 231 55.0
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.4e-60 236.1 211 57.8
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.4e-60 236.1 210 57.1
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 3.1e-60 235.7 223 54.3
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 4.1e-60 235.3 224 54.9
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 5.3e-60 235.0 223 55.2
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.3e-60 235.0 213 58.7
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 6.9e-60 234.6 226 53.1
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.2e-59 233.8 226 54.9
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.2e-59 233.8 212 57.5
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.4e-59 232.3 225 53.8
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.5e-59 231.9 211 55.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 4.5e-59 231.9 215 57.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.9e-59 231.5 223 55.2
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.6e-59 231.1 232 52.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.0e-58 230.7 214 55.6
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.0e-58 230.7 200 57.5
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 1.7e-58 229.9 219 55.7
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 3.8e-58 228.8 220 53.6
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 6.5e-58 228.0 210 56.7
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 6.5e-58 228.0 221 53.8
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 8.5e-58 227.6 211 55.0
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.4e-57 226.9 214 53.7
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.5e-57 226.1 209 56.9
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.5e-57 226.1 209 56.9
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 9.3e-57 224.2 198 56.6
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 9.3e-57 224.2 168 63.7
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.2e-56 223.8 222 52.3
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.1e-56 223.0 211 55.9
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 2.7e-56 222.6 208 57.7
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 3.6e-56 222.2 147 71.4
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 6.1e-56 221.5 214 54.2
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.0e-55 220.7 208 56.7
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.0e-55 220.7 210 53.3
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.0e-55 220.7 210 52.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-55 220.3 222 51.8
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-55 220.3 222 52.7
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.3e-55 220.3 210 53.3
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.8e-55 219.9 221 52.5
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 3.9e-55 218.8 201 54.2
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 8.7e-55 217.6 214 53.3
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.1e-54 217.2 207 54.6
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.4e-54 214.5 148 66.2
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.2e-53 213.0 213 53.1
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.8e-53 211.8 216 52.8
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.4e-52 210.3 217 52.1
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.8e-52 209.9 168 57.7
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.8e-52 209.9 245 49.4
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 9.1e-52 207.6 198 52.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.4e-51 205.7 135 68.1
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 4.5e-51 205.3 211 53.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 7.7e-51 204.5 167 61.7
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.1e-49 200.7 142 64.1
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.4e-49 200.3 243 45.7
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.6e-48 195.7 198 54.0
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 4.6e-48 195.3 193 52.3
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.0e-47 194.1 228 49.6
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.0e-47 194.1 213 49.8
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.8e-47 193.4 192 51.6
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.3e-47 193.0 160 60.6
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.0e-47 192.6 136 64.7
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.0e-47 192.6 136 64.7
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.0e-47 192.6 213 48.8
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 6.7e-47 191.4 213 48.8
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 6.7e-47 191.4 210 48.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.7e-46 188.3 219 49.3
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.2e-45 186.4 215 47.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 3.7e-45 185.7 165 55.8
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.3e-45 184.9 213 47.4
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.8e-44 183.3 182 50.5
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.8e-44 183.3 210 48.6
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 9.1e-44 181.0 221 45.7
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 5.0e-42 175.3 189 52.9
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 5.5e-41 171.8 127 62.2
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.7e-40 169.5 148 54.7
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.0e-39 167.5 178 47.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.0e-39 166.0 167 50.3
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 3.9e-39 165.6 123 61.0
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.4e-38 162.2 216 46.8
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 9.7e-38 161.0 205 42.4
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.3e-37 160.6 224 43.3
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 2.8e-37 159.5 173 46.8
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.4e-36 156.4 122 57.4
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 7.0e-36 154.8 127 59.8
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 2.6e-35 152.9 216 44.9
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.9e-34 149.4 129 54.3
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.1e-33 147.5 150 53.3
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.6e-32 143.7 264 37.9
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.8e-31 140.2 82 73.2
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.8e-29 132.1 88 68.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.8e-28 130.2 63 96.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.4e-23 114.0 54 96.3
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.8e-21 105.5 52 94.2
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 5.7e-06 55.5 121 36.4


User provided reference genes

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