Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.5e-86 322.8 163 100.0
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 2.0e-54 216.1 109 94.5
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 2.0e-54 216.1 109 94.5
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 2.5e-52 209.1 109 92.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 2.5e-52 209.1 109 92.7
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 9.4e-52 207.2 185 68.6
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 7.0e-47 191.0 109 85.3
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 5.0e-45 184.9 109 80.7
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-41 173.7 109 78.0
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.2e-41 173.7 109 78.0
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 1.5e-41 173.3 109 79.8
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 4.4e-41 171.8 137 71.5
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 2.2e-40 169.5 93 87.1
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 6.3e-40 167.9 122 73.0
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.1e-36 157.1 88 85.2
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.1e-36 157.1 88 86.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.6e-35 153.3 85 82.4
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 4.7e-35 151.8 89 77.5
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 8.0e-35 151.0 89 75.3
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.8e-34 149.8 94 81.9
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 1.8e-34 149.8 124 64.5
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 3.0e-34 149.1 92 70.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 5.2e-34 148.3 85 76.5
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 1.2e-33 147.1 85 75.3
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.2e-33 147.1 89 74.2
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 1.5e-33 146.7 105 64.8
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.5e-33 146.7 96 70.8
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.5e-33 146.7 85 78.8
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-33 146.7 85 80.0
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 3.4e-33 145.6 85 76.5
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 9.8e-33 144.1 92 70.7
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 9.8e-33 144.1 93 69.9
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 9.8e-33 144.1 85 74.1
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 9.8e-33 144.1 85 74.1
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.3e-32 143.7 84 75.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.3e-32 143.7 85 75.3
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.7e-32 143.3 85 72.9
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.7e-32 143.3 84 75.0
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.8e-32 142.5 165 52.7
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.7e-32 142.1 109 66.1
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.8e-32 141.7 139 55.4
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.8e-32 141.7 85 76.5
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 8.3e-32 141.0 85 71.8
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 1.8e-31 139.8 85 75.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 2.4e-31 139.4 85 71.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.4e-31 139.4 85 71.8
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.4e-31 139.4 92 67.4
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.1e-31 139.0 92 67.4
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.1e-31 139.0 92 67.4
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 4.1e-31 138.7 84 76.2
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 7.0e-31 137.9 85 70.6
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.6e-30 136.7 85 75.3
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.0e-30 136.3 85 72.9
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.7e-30 136.0 85 69.4
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 2.7e-30 136.0 79 72.2
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.5e-30 135.6 87 70.1
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 3.5e-30 135.6 88 69.3
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 5.9e-30 134.8 72 83.3
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 7.7e-30 134.4 84 75.0
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 7.7e-30 134.4 96 68.8
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.0e-29 134.0 85 74.1
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.7e-29 133.3 87 70.1
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 1.7e-29 133.3 85 70.6
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 2.3e-29 132.9 85 71.8
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.3e-29 132.9 85 69.4
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.3e-29 132.9 85 69.4
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 2.9e-29 132.5 88 72.7
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 8.6e-29 131.0 125 58.4
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.1e-28 130.6 86 69.8
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.5e-28 130.2 79 68.4
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.5e-28 130.2 85 70.6
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.5e-28 129.4 86 67.4
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 3.3e-28 129.0 84 67.9
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.3e-28 129.0 110 58.2
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 4.2e-28 128.6 137 49.6
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 4.2e-28 128.6 86 65.1
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 9.5e-28 127.5 75 72.0
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.6e-27 126.7 75 70.7
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 3.6e-27 125.6 86 66.3
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 3.6e-27 125.6 81 67.9
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 3.6e-27 125.6 84 66.7
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 4.7e-27 125.2 162 51.9
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.7e-27 125.2 84 71.4
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.7e-27 125.2 84 70.2
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.8e-26 123.2 84 70.2
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.8e-26 123.2 85 64.7
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 2.3e-26 122.9 87 62.1
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 3.0e-26 122.5 89 66.3
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.2e-26 121.7 78 70.5
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 5.2e-26 121.7 86 61.6
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 6.8e-26 121.3 85 67.1
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.2e-25 120.6 69 79.7
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.0e-25 119.8 71 78.9
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 2.0e-25 119.8 85 62.4
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.6e-25 119.4 78 67.9
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 3.4e-25 119.0 162 51.9
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 3.4e-25 119.0 84 64.3
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 7.5e-25 117.9 86 58.1
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 1.7e-24 116.7 91 60.4
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.8e-24 115.9 87 65.5
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.7e-24 115.5 73 71.2
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 3.7e-24 115.5 91 59.3
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 8.3e-24 114.4 73 74.0
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.1e-23 114.0 87 65.5
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 4.1e-23 112.1 84 59.5
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 5.4e-23 111.7 98 54.1
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 2.7e-22 109.4 73 71.2
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.7e-22 109.4 87 58.6
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 2.7e-22 109.4 83 56.6
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.5e-22 108.6 63 73.0
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.1e-20 104.0 59 78.0
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.1e-20 104.0 58 81.0
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 4.3e-20 102.1 92 50.0
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 4.3e-20 102.1 103 50.5
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 5.6e-20 101.7 83 54.2
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 2.1e-19 99.8 80 63.8
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 4.7e-19 98.6 163 43.6
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 4.7e-19 98.6 162 42.0
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 8.0e-19 97.8 80 51.2
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 8.0e-19 97.8 83 54.2
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 1.0e-18 97.4 78 57.7
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.0e-18 97.4 55 80.0
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 3.1e-18 95.9 59 72.9
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.2e-18 95.1 83 53.0
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 6.8e-18 94.7 127 47.2
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 6.8e-18 94.7 86 51.2
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.2e-17 94.0 82 52.4
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.5e-17 93.6 82 53.7
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 4.4e-17 92.0 55 76.4
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 5.8e-17 91.7 162 42.6
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 2.9e-16 89.4 93 48.4
BcaC04g19454 Brassica carinata HOM05D003803 ORTHO05D004456 3.7e-16 89.0 130 49.2
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 4.9e-16 88.6 55 70.9
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 4.9e-16 88.6 91 42.9
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 4.9e-16 88.6 80 53.8
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 1.1e-15 87.4 69 60.9
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.9e-15 86.7 99 47.5
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.4e-15 86.3 176 35.8
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.4e-15 86.3 127 46.5
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.6e-14 83.6 57 70.2
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 3.5e-14 82.4 87 49.4
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.5e-14 82.4 73 52.1
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.3e-13 80.5 72 54.2
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.7e-13 80.1 70 55.7
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 3.0e-13 79.3 47 63.8
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.9e-12 76.6 111 39.6
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.5e-12 76.3 115 38.3
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 3.3e-12 75.9 70 48.6
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 5.6e-12 75.1 62 62.9
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.2e-11 73.9 38 92.1
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 1.2e-11 73.9 37 91.9
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.2e-11 73.9 43 81.4
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 1.6e-11 73.6 81 45.7
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.1e-11 73.2 37 91.9
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 2.1e-11 73.2 41 82.9
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 2.8e-11 72.8 115 42.6
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.8e-11 72.8 37 91.9
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 6.2e-11 71.6 37 91.9
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 6.2e-11 71.6 51 66.7
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 8.0e-11 71.2 48 70.8
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 8.0e-11 71.2 37 89.2
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 2.3e-10 69.7 82 43.9
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.1e-10 69.3 46 76.1
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 4.0e-10 68.9 83 42.2
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 2.0e-09 66.6 82 42.7
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 2.6e-09 66.2 46 69.6
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 5.8e-09 65.1 52 57.7
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.7e-08 62.4 88 37.5
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 3.2e-07 59.3 58 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 7.1e-07 58.2 85 35.3
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 7.1e-07 58.2 44 63.6
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 3.5e-06 55.8 71 40.8
Duzib052G0941 Durio zibethinus HOM05D002369 ORTHO05D002435 3.5e-06 55.8 55 47.3
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 4.6e-06 55.5 55 47.3
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 6.0e-06 55.1 27 92.6


User provided reference genes

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