Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 2.5e-114 415.6 230 100.0
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 3.7e-70 268.9 228 71.9
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 3.7e-70 268.9 232 73.3
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 8.3e-70 267.7 232 72.8
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 8.3e-70 267.7 232 72.8
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 8.3e-70 267.7 228 65.8
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 3.5e-68 262.3 243 71.2
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 7.7e-68 261.2 236 67.8
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 7.7e-68 261.2 236 67.8
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.0e-67 260.8 243 70.8
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 3.8e-67 258.8 235 67.7
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 6.6e-67 258.1 252 65.1
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 9.5e-66 254.2 236 69.9
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 6.1e-65 251.5 237 70.0
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 3.0e-64 249.2 234 70.5
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 2.0e-63 246.5 238 70.2
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 2.7e-60 236.1 249 65.9
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 2.7e-60 236.1 236 66.1
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 2.6e-55 219.5 228 64.5
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 5.8e-55 218.4 237 65.0
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 9.2e-53 211.1 250 60.4
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 6.6e-51 204.9 242 63.2
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 2.0e-39 166.8 248 49.6
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 9.9e-39 164.5 232 48.3
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 7.8e-28 128.3 293 44.7
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 2.2e-22 110.2 226 37.2
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 2.4e-21 106.7 291 33.7
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 7.1e-21 105.1 307 34.9
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.2e-20 104.4 264 31.8
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.2e-20 104.4 281 32.4
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.1e-20 103.6 264 31.8
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 2.7e-20 103.2 298 34.2
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 7.8e-20 101.7 306 32.7
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 1.0e-19 101.3 303 31.7
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.7e-19 100.5 272 32.4
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 1.7e-19 100.5 313 30.4
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 2.3e-19 100.1 298 33.6
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 6.6e-19 98.6 261 34.1
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 8.7e-19 98.2 303 32.7
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.9e-18 97.1 264 31.8
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 5.6e-18 95.5 302 31.8
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 7.3e-18 95.1 290 36.2
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 7.3e-18 95.1 230 38.3
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 9.6e-18 94.7 324 30.9
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 1.3e-17 94.4 51 96.1
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 1.6e-17 94.0 242 39.7
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 2.1e-17 93.6 153 41.2
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 3.6e-17 92.8 278 30.6
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 4.8e-17 92.4 295 30.8
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 1.4e-16 90.9 291 32.3
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 4.0e-16 89.4 257 32.3
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 4.0e-16 89.4 293 32.4
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 5.3e-16 89.0 296 31.4
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 6.9e-16 88.6 342 29.8
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 9.0e-16 88.2 302 29.5
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 1.5e-15 87.4 312 29.8
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 2.0e-15 87.0 160 38.8
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 2.6e-15 86.7 302 30.5
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 4.5e-15 85.9 148 42.6
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 5.8e-15 85.5 118 48.3
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.8e-15 85.5 152 38.8
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 5.8e-15 85.5 157 38.2
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 7.6e-15 85.1 271 33.9
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 7.6e-15 85.1 259 32.0
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 9.9e-15 84.7 288 32.6
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 9.9e-15 84.7 307 29.6
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 9.9e-15 84.7 157 36.9
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 1.3e-14 84.3 309 29.8
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.7e-14 84.0 164 37.8
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 2.2e-14 83.6 326 27.6
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 2.9e-14 83.2 151 40.4
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 3.8e-14 82.8 259 33.2
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 6.4e-14 82.0 47 89.4
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 6.4e-14 82.0 273 29.3
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 8.4e-14 81.6 275 30.5
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.1e-13 81.3 52 80.8
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.1e-13 81.3 155 41.3
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.1e-13 81.3 116 47.4
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.4e-13 80.9 51 82.4
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 1.4e-13 80.9 50 86.0
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 1.9e-13 80.5 153 40.5
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.9e-13 80.5 160 36.2
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 1.9e-13 80.5 152 41.4
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.2e-13 79.7 47 87.2
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 3.2e-13 79.7 47 89.4
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 4.2e-13 79.3 45 91.1
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 4.2e-13 79.3 45 91.1
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 4.2e-13 79.3 162 36.4
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 5.4e-13 79.0 54 79.6
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 5.4e-13 79.0 144 45.1
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 5.4e-13 79.0 45 88.9
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 7.1e-13 78.6 47 87.2
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 7.1e-13 78.6 46 89.1
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 9.3e-13 78.2 45 88.9
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 1.2e-12 77.8 45 91.1
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.6e-12 77.4 161 37.9
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 2.1e-12 77.0 300 33.3
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 2.1e-12 77.0 45 86.7
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 3.5e-12 76.3 44 88.6
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 3.5e-12 76.3 47 83.0
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 3.5e-12 76.3 48 83.3
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 3.5e-12 76.3 120 46.7
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 3.5e-12 76.3 131 43.5
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 6.0e-12 75.5 159 35.8
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 7.9e-12 75.1 54 77.8
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 7.9e-12 75.1 303 32.3
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 7.9e-12 75.1 236 38.1
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.0e-11 74.7 42 90.5
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.0e-11 74.7 224 35.3
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.3e-11 74.3 304 28.6
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 2.3e-11 73.6 238 31.9
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.9e-11 72.8 59 67.8
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 5.1e-11 72.4 82 52.4
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 5.1e-11 72.4 111 45.0
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 5.1e-11 72.4 340 31.2
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 8.7e-11 71.6 41 90.2
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 1.5e-10 70.9 47 78.7
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.9e-10 70.5 243 31.7
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 2.5e-10 70.1 128 39.8
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 1.3e-09 67.8 308 31.8
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.8e-08 63.9 133 36.8
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 2.4e-08 63.5 98 46.9
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 2.4e-08 63.5 219 32.4
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 4.0e-08 62.8 37 86.5
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.3e-08 62.4 94 46.8
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 1.2e-07 61.2 46 73.9
unitig_0.g2816 Utricularia gibba HOM05D005213 ORTHO05D006229 2.6e-07 60.1 215 29.3
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.3e-06 57.8 151 31.8
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 4.9e-06 55.8 151 31.1
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 4.9e-06 55.8 201 29.4


User provided reference genes

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