Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.7e-182 642.5 318 100.0
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 7.0e-128 461.1 273 85.7
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 4.6e-127 458.4 273 85.3
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 4.6e-127 458.4 273 85.3
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 4.6e-127 458.4 273 85.3
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 5.0e-126 454.9 273 85.0
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 9.9e-114 414.1 276 80.4
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.6e-103 380.2 281 73.7
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 3.8e-97 359.0 276 71.4
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 8.7e-94 347.8 277 69.3
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.1e-93 347.4 279 69.9
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.6e-90 336.3 278 69.1
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.4e-88 329.7 279 67.0
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 5.0e-65 252.3 280 54.6
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.4e-62 244.2 288 54.9
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.7e-57 227.3 284 49.6
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.9e-56 223.8 283 49.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 3.0e-54 216.5 283 49.1
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.1e-51 208.0 281 47.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.4e-51 207.6 284 48.2
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.3e-51 205.7 281 46.6
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.0e-51 205.3 281 46.3
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.0e-49 201.4 281 45.9
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.0e-49 201.4 281 45.9
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 6.5e-49 198.7 122 84.4
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.5e-48 197.6 280 44.3
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 3.2e-48 196.4 283 43.8
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.0e-45 187.2 288 44.8
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 3.3e-45 186.4 257 46.7
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 9.7e-45 184.9 320 41.2
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.8e-44 183.3 282 41.8
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 4.8e-44 182.6 284 41.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-43 181.0 260 46.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 7.0e-43 178.7 258 44.2
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.7e-42 176.8 260 45.4
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 4.5e-42 176.0 298 40.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 5.9e-42 175.6 259 44.8
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 6.5e-41 172.2 275 40.7
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 8.5e-41 171.8 283 40.3
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 8.5e-41 171.8 283 42.0
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.1e-40 171.4 282 41.1
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.5e-40 171.0 284 40.5
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.9e-40 170.6 295 41.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 9.4e-40 168.3 273 41.8
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.2e-39 167.9 288 39.6
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.6e-39 167.5 287 39.4
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 6.1e-39 165.6 283 40.3
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.0e-38 162.9 284 42.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 8.8e-38 161.8 242 41.3
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 4.4e-37 159.5 288 40.6
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 4.4e-37 159.5 289 39.4
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 5.7e-37 159.1 202 50.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.3e-36 157.9 285 38.6
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.3e-36 155.6 314 37.6
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.3e-36 155.6 314 37.6
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.4e-35 154.5 246 42.7
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.4e-35 153.7 288 41.0
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.1e-35 153.3 278 41.4
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 5.4e-35 152.5 289 40.1
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 7.0e-35 152.1 288 39.6
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 9.1e-35 151.8 288 39.9
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 9.1e-35 151.8 280 39.6
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.0e-34 150.6 287 38.7
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.5e-34 149.4 290 39.3
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.9e-33 146.7 267 40.8
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.9e-33 146.7 230 43.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.1e-32 144.8 203 48.3
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.5e-32 143.7 270 35.6
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.2e-32 142.1 260 40.4
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.2e-32 142.1 333 36.3
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 3.0e-30 136.7 171 45.6
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 3.0e-30 136.7 234 40.6
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 6.8e-30 135.6 229 40.6
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 6.8e-30 135.6 234 40.2
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 8.9e-30 135.2 277 36.8
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 8.9e-30 135.2 278 37.4
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.2e-29 134.8 284 35.6
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.4e-29 133.3 284 37.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-27 127.9 277 35.7
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.8e-27 127.5 294 35.7
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.8e-27 127.5 382 31.7
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.4e-27 127.1 285 36.5
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 3.1e-27 126.7 286 36.0
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 5.4e-27 125.9 206 43.2
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 2.0e-26 124.0 204 41.7
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.5e-26 123.2 395 30.6
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 7.8e-26 122.1 270 37.0
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.8e-26 122.1 271 34.3
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.0e-25 121.7 303 31.7
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.7e-25 120.9 283 36.4
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 8.6e-25 118.6 265 35.8
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.7e-23 112.8 265 34.7
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.1e-23 112.5 212 37.7
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.0e-22 111.7 215 37.7
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.0e-22 111.7 289 33.6
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.4e-22 111.3 274 31.4
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 6.8e-22 109.0 225 38.2
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.5e-21 107.8 218 35.3
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 5.8e-21 105.9 219 35.2
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.7e-20 104.4 244 33.2
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.2e-20 104.0 280 30.7
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 3.2e-19 100.1 287 30.0
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.1e-19 99.8 238 34.0
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 5.4e-19 99.4 269 31.2
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.0e-18 97.4 247 33.2
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 3.9e-17 93.2 317 31.9
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 3.9e-17 93.2 192 34.9
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.9e-16 90.9 307 29.3
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 9.5e-16 88.6 182 39.6
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.2e-15 88.2 155 40.0
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 3.6e-15 86.7 247 31.2
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 8.0e-15 85.5 271 27.3
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-14 85.1 151 38.4
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.4e-14 84.7 223 32.3
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 1.8e-14 84.3 140 42.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.3e-14 84.0 301 29.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 5.2e-14 82.8 211 34.1
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 2.2e-12 77.4 215 30.7
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 2.2e-12 77.4 309 28.5
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 4.9e-12 76.3 310 28.1
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 8.3e-12 75.5 365 24.9
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.4e-11 74.7 271 29.2
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 3.2e-11 73.6 252 30.2
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 9.2e-11 72.0 143 34.3
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.7e-10 70.5 83 51.8
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.6e-10 69.7 135 34.8
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.5e-08 64.7 283 25.8
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.3e-08 63.5 184 31.0
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 3.3e-08 63.5 192 29.7
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.8e-07 60.5 180 32.2
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 3.6e-07 60.1 81 43.2
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 3.6e-07 60.1 197 29.9
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 4.7e-07 59.7 117 32.5
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 4.0e-06 56.6 197 27.4


User provided reference genes

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