Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 4.4e-115 417.9 203 100.0
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.2e-40 170.6 124 76.6
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 1.6e-40 170.2 124 76.6
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.6e-40 170.2 124 76.6
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 2.7e-40 169.5 124 75.8
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 1.0e-39 167.5 123 76.4
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 3.9e-39 165.6 124 75.8
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 5.1e-39 165.2 124 75.8
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 1.5e-38 163.7 123 74.8
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 9.6e-38 161.0 124 74.2
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 9.6e-38 161.0 124 74.2
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 9.6e-38 161.0 124 74.2
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 4.8e-37 158.7 124 72.6
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 2.4e-36 156.4 124 71.0
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 3.1e-36 156.0 124 72.6
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 4.0e-36 155.6 124 71.0
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 6.9e-36 154.8 124 71.8
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 6.9e-36 154.8 124 71.8
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 4.5e-35 152.1 128 67.2
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 4.5e-35 152.1 124 68.5
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 1.1e-33 147.5 131 64.9
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.1e-33 147.5 128 64.1
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 1.1e-33 147.5 128 64.1
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 1.4e-33 147.1 128 66.4
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.4e-33 147.1 128 66.4
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.4e-33 147.1 128 66.4
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 3.2e-33 146.0 128 65.6
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.2e-33 146.0 128 62.5
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 3.2e-33 146.0 135 63.0
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 3.2e-33 146.0 128 63.3
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.2e-32 144.1 128 61.7
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 1.2e-32 144.1 131 65.6
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.6e-32 143.7 128 64.8
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.6e-32 143.7 129 62.0
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 2.1e-32 143.3 129 63.6
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 2.1e-32 143.3 128 64.8
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 3.5e-32 142.5 131 64.9
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 3.5e-32 142.5 124 64.5
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.6e-32 142.1 123 65.0
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 6.0e-32 141.7 129 62.8
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 1.0e-31 141.0 129 62.0
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 1.3e-31 140.6 123 65.0
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 1.8e-31 140.2 123 62.6
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.3e-31 139.8 123 63.4
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.3e-31 139.8 128 60.9
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 2.3e-31 139.8 128 61.7
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 3.0e-31 139.4 129 62.0
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 3.0e-31 139.4 129 62.0
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 3.0e-31 139.4 123 65.0
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 3.9e-31 139.0 122 60.7
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 3.9e-31 139.0 123 65.0
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 3.9e-31 139.0 123 65.0
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 6.7e-31 138.3 123 61.0
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 6.7e-31 138.3 124 61.3
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.1e-30 137.5 123 61.0
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.1e-30 137.5 128 60.2
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.9e-30 136.7 123 60.2
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.9e-30 136.7 129 62.0
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 1.9e-30 136.7 128 60.9
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 1.9e-30 136.7 129 60.5
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 1.9e-30 136.7 128 60.9
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 2.5e-30 136.3 129 58.1
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 2.5e-30 136.3 128 60.2
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 4.3e-30 135.6 128 59.4
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 4.3e-30 135.6 123 64.2
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 5.7e-30 135.2 123 61.8
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 5.7e-30 135.2 126 63.5
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 9.6e-30 134.4 129 59.7
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 9.6e-30 134.4 129 59.7
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 9.6e-30 134.4 126 62.7
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 9.6e-30 134.4 126 62.7
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 9.6e-30 134.4 89 78.7
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 1.3e-29 134.0 136 59.6
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.3e-29 134.0 129 59.7
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 1.3e-29 134.0 128 60.9
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.6e-29 133.7 129 60.5
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 1.6e-29 133.7 128 58.6
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 2.1e-29 133.3 128 61.7
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 2.1e-29 133.3 123 62.6
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 2.8e-29 132.9 122 59.8
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 3.7e-29 132.5 128 60.2
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 4.8e-29 132.1 123 61.8
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.3e-29 131.7 123 61.8
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.3e-29 131.7 123 61.8
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 2.4e-28 129.8 126 61.1
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 3.1e-28 129.4 129 58.1
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 5.3e-28 128.6 126 61.1
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 5.3e-28 128.6 126 61.1
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 5.3e-28 128.6 126 61.1
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 9.0e-28 127.9 89 74.2
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 3.4e-27 125.9 89 74.2
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.3e-26 124.0 89 74.2
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.7e-26 123.6 163 48.5
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 2.2e-26 123.2 128 56.2
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.2e-26 123.2 89 68.5
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 1.1e-25 120.9 89 69.7
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 1.1e-25 120.9 170 46.5
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 2.5e-25 119.8 89 68.5
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 4.2e-25 119.0 160 46.2
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 5.5e-25 118.6 121 56.2
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.2e-24 117.5 89 66.3
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 1.2e-24 117.5 119 57.1
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 4.6e-24 115.5 91 64.8
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 6.7e-23 111.7 111 60.4
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 2.5e-22 109.8 124 51.6
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 2.5e-22 109.8 122 52.5
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 7.4e-22 108.2 128 53.9
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 1.6e-21 107.1 123 49.6
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 4.8e-21 105.5 108 57.4
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 1.5e-19 100.5 111 55.9
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 7.7e-19 98.2 122 47.5
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 1.4e-17 94.0 62 74.2
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 9.4e-17 91.3 70 71.4
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.6e-16 90.5 75 65.3
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 2.1e-16 90.1 123 44.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.7e-16 89.7 61 77.0
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 4.6e-16 89.0 94 58.5
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 4.6e-16 89.0 92 58.7
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 1.8e-15 87.0 60 75.0
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 2.3e-15 86.7 61 73.8
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 2.3e-15 86.7 61 73.8
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 5.1e-15 85.5 61 72.1
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.5e-14 84.0 74 63.5
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 6.3e-13 78.6 79 60.8
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 6.3e-13 78.6 64 64.1
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 4.1e-12 75.9 64 65.6
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 5.3e-12 75.5 77 58.4
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 6.1e-08 62.0 55 63.6
BcaC03g13860 Brassica carinata HOM05D004598 ORTHO05D093366 5.1e-07 58.9 60 53.3
BcaB05g22750 Brassica carinata HOM05D000001 ORTHO05D000003 3.3e-06 56.2 72 51.4
BolC9t58556H Brassica oleracea HOM05D000001 ORTHO05D000003 4.4e-06 55.8 72 55.6
Thhalv10012749m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 5.7e-06 55.5 72 51.4


User provided reference genes

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