Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 1.9e-170 602.4 309 100.0
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 1.8e-152 542.7 327 89.3
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 2.0e-151 539.3 327 88.7
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 1.3e-147 526.6 326 86.2
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 2.5e-146 522.3 326 86.2
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 8.9e-144 513.8 326 83.4
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 2.6e-143 512.3 327 84.1
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 4.1e-141 505.0 324 82.1
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 1.4e-133 479.9 325 78.2
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 1.6e-132 476.5 325 77.5
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 8.1e-129 464.2 327 76.8
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 9.3e-125 450.7 255 92.9
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 3.9e-107 392.1 324 64.5
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 3.4e-87 325.9 301 58.1
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 4.5e-87 325.5 301 58.1
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 1.1e-85 320.9 305 58.7
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.4e-85 320.5 301 57.8
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.2e-84 317.4 300 56.7
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 1.6e-84 317.0 301 57.8
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 3.6e-84 315.8 323 54.8
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.0e-83 314.3 324 54.0
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 1.4e-83 313.9 299 56.2
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.8e-83 313.5 294 57.8
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 8.8e-83 311.2 302 56.6
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 2.0e-82 310.1 324 54.0
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 5.7e-82 308.5 301 57.8
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 1.3e-81 307.4 294 56.8
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 1.3e-81 307.4 302 56.0
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 1.8e-80 303.5 324 53.7
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.4e-80 303.1 239 69.9
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 2.4e-80 303.1 324 52.8
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 1.2e-79 300.8 284 57.7
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 5.9e-79 298.5 293 57.3
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 1.0e-78 297.7 325 52.6
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 1.7e-78 297.0 331 52.9
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 6.5e-78 295.0 295 52.2
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 8.5e-78 294.7 274 57.3
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 5.5e-77 292.0 276 56.9
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 5.5e-77 292.0 299 54.2
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 7.2e-77 291.6 298 54.4
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 7.2e-77 291.6 291 56.0
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 9.4e-77 291.2 305 54.1
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 2.1e-76 290.0 274 57.7
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.1e-76 290.0 274 58.4
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 2.1e-76 290.0 274 58.4
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 2.1e-76 290.0 294 53.1
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 2.7e-76 289.7 268 59.7
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 1.8e-75 287.0 270 57.0
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 3.9e-75 285.8 314 51.3
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 3.9e-75 285.8 270 55.9
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 6.7e-75 285.0 285 55.1
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 8.8e-75 284.6 306 52.0
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 2.6e-74 283.1 298 52.7
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 4.4e-74 282.3 275 54.9
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 9.7e-74 281.2 298 52.3
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 1.3e-73 280.8 296 54.4
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 1.7e-73 280.4 298 51.3
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 4.1e-72 275.8 301 51.2
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 4.1e-72 275.8 305 53.1
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 7.0e-72 275.0 283 50.5
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 2.6e-71 273.1 299 51.5
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 4.5e-71 272.3 298 52.3
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 4.5e-71 272.3 305 52.8
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.3e-70 270.8 300 50.7
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 2.2e-70 270.0 300 50.3
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.9e-69 266.9 309 50.5
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 7.2e-69 265.0 326 47.5
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 7.2e-69 265.0 284 52.8
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 9.4e-69 264.6 306 48.7
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 4.7e-68 262.3 268 54.9
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 1.4e-67 260.8 288 52.1
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 9.7e-66 254.6 266 53.8
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 1.7e-65 253.8 275 53.8
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 4.8e-65 252.3 288 51.7
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 1.8e-64 250.4 364 43.1
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 1.2e-63 247.7 274 53.6
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 1.6e-63 247.3 298 50.7
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.0e-62 244.6 199 62.3
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.5e-61 240.7 311 44.7
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 3.2e-61 239.6 170 75.3
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 4.2e-61 239.2 287 51.2
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 5.5e-61 238.8 272 50.0
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 2.7e-60 236.5 271 50.2
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 2.7e-60 236.5 295 44.7
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 4.7e-60 235.7 267 49.8
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 8.0e-60 235.0 255 50.6
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.8e-59 233.8 289 47.4
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 4.4e-58 229.2 278 51.8
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 5.9e-55 218.8 292 41.1
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 1.6e-52 210.7 270 44.1
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 2.7e-52 209.9 380 36.6
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 6.8e-51 205.3 129 76.0
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 9.8e-50 201.4 268 46.6
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.4e-48 197.6 255 46.7
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.2e-47 194.5 262 45.0
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.5e-45 187.6 325 37.2
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 3.3e-45 186.4 200 49.5
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 5.6e-45 185.7 135 68.9
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 9.5e-45 184.9 155 63.2
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 1.0e-43 181.4 269 39.8
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.7e-42 175.6 127 68.5
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.9e-38 162.9 98 75.5
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.8e-36 156.8 87 87.4
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 3.6e-36 156.4 182 50.5
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 3.1e-35 153.3 263 36.5
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 7.5e-34 148.7 98 69.4
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 8.3e-33 145.2 89 76.4
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.9e-32 144.1 267 36.0
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 5.4e-32 142.5 225 40.0
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.9e-30 136.3 270 36.7
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 3.9e-30 136.3 183 41.5
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.5e-29 133.7 215 40.0
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.2e-28 131.3 82 73.2
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 4.0e-27 126.3 100 62.0
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 2.9e-25 120.2 157 47.1
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 3.5e-23 113.2 166 42.2
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 7.8e-23 112.1 199 43.2
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.3e-22 111.3 122 49.2
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.3e-19 100.5 156 42.3
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 6.4e-17 92.4 83 59.0
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.4e-16 91.3 72 61.1
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 1.0e-14 85.1 82 57.3
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 6.9e-11 72.4 54 63.0
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 5.8e-10 69.3 61 60.7
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 7.6e-10 68.9 61 60.7
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 1.7e-09 67.8 103 39.8
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 3.2e-08 63.5 55 61.8
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 4.2e-08 63.2 49 61.2
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 5.4e-08 62.8 63 54.0
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 7.1e-08 62.4 77 44.2
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 1.2e-07 61.6 88 34.1
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 1.7e-06 57.8 47 59.6


User provided reference genes

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