Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04679 Brassica carinata HOM05D037675 ORTHO05D002810 1.9e-59 232.3 111 100.0
BcaC02g07474 Brassica carinata HOM05D037675 ORTHO05D092548 3.8e-36 154.8 111 72.1
BcaC02g08509 Brassica carinata HOM05D037675 ORTHO05D092189 1.1e-22 110.2 90 65.6
Carub.0008s1140 Capsella rubella HOM05D002503 ORTHO05D002810 6.9e-14 80.9 103 45.6
AL8G25670 Arabidopsis lyrata HOM05D002503 ORTHO05D002810 1.2e-13 80.1 107 45.8
Carub.0008s1141 Capsella rubella HOM05D002503 ORTHO05D002810 1.2e-13 80.1 107 47.7
Thhalv10013410m.g Eutrema salsugineum HOM05D002503 ORTHO05D002810 2.0e-13 79.3 107 45.8
Sp6g13550 Schrenkiella parvula HOM05D002503 ORTHO05D002810 3.4e-13 78.6 107 43.9
AL8G25630 Arabidopsis lyrata HOM05D002503 ORTHO05D002810 4.5e-13 78.2 103 43.7
AT5G51370 Arabidopsis thaliana HOM05D002503 ORTHO05D002810 4.5e-13 78.2 103 43.7
THA.LOC104811525 Tarenaya hassleriana HOM05D002503 ORTHO05D002810 5.9e-13 77.8 106 45.3
AT5G51380 Arabidopsis thaliana HOM05D002503 ORTHO05D002810 2.2e-12 75.9 107 44.9
BcaC01g06088 Brassica carinata HOM05D002503 ORTHO05D002810 1.1e-11 73.6 108 44.4
BolC3t14297H Brassica oleracea HOM05D002503 ORTHO05D002810 1.1e-11 73.6 108 44.4
CARHR264100 Cardamine hirsuta HOM05D002503 ORTHO05D002810 1.1e-11 73.6 103 44.7
Aa31LG3G7840 Aethionema arabicum HOM05D002503 ORTHO05D002810 2.5e-11 72.4 107 41.1
C03p19090 Brassica napus HOM05D002503 ORTHO05D002810 2.5e-11 72.4 108 43.5
BcaC04g20685 Brassica carinata HOM05D002503 ORTHO05D002810 3.2e-11 72.0 107 41.1
C09p40610 Brassica napus HOM05D002503 ORTHO05D002810 3.2e-11 72.0 107 41.1
BolC9t56943H Brassica oleracea HOM05D002503 ORTHO05D002810 3.2e-11 72.0 107 41.1
A03p16210 Brassica napus HOM05D002503 ORTHO05D002810 7.2e-11 70.9 108 42.6
BraA03t10912Z Brassica rapa HOM05D002503 ORTHO05D002810 7.2e-11 70.9 108 42.6
BcaB08g35493 Brassica carinata HOM05D002503 ORTHO05D002810 9.4e-11 70.5 107 41.1
A10p09110 Brassica napus HOM05D002503 ORTHO05D002810 1.6e-10 69.7 107 40.2
BraA10t42994Z Brassica rapa HOM05D002503 ORTHO05D002810 1.6e-10 69.7 107 40.2
BcaC01g06117 Brassica carinata HOM05D002503 ORTHO05D002810 2.7e-10 68.9 107 42.1
TWI39G0886 Tripterygium wilfordii HOM05D002503 ORTHO05D002810 2.5e-08 62.4 107 38.3
Ciclev10004858m.g Citrus clementina HOM05D002503 ORTHO05D002810 9.7e-08 60.5 107 37.4
MELO3C017665.2 Cucumis melo HOM05D002503 ORTHO05D002810 1.7e-07 59.7 105 37.1
Sed0013486 Sechium edule HOM05D002503 ORTHO05D002810 1.7e-07 59.7 105 37.1
TWI39G1168 Tripterygium wilfordii HOM05D002503 ORTHO05D002810 1.7e-07 59.7 107 36.4
ClCG07G016810 Citrullus lanatus HOM05D002503 ORTHO05D002810 2.2e-07 59.3 104 37.5
Potri.001G125800 Populus trichocarpa HOM05D002503 ORTHO05D002810 2.2e-07 59.3 107 35.5
Sabra03G0074800 Salix brachista HOM05D002503 ORTHO05D002810 2.8e-07 58.9 107 35.5
CsaV3_4G004010 Cucumis sativus L. HOM05D002503 ORTHO05D002810 3.7e-07 58.5 92 39.1
Cfa008152 Carpinus fangiana HOM05D002503 ORTHO05D002810 4.8e-07 58.2 129 34.1
Haze_13879 Corylus avellana HOM05D002503 ORTHO05D002810 4.8e-07 58.2 129 34.1
QL09p005350 Quercus lobata HOM05D002503 ORTHO05D002810 6.3e-07 57.8 107 35.5
Nn1g00982 Nelumbo nucifera HOM05D002503 ORTHO05D002810 8.2e-07 57.4 107 35.5
TAR375G0105 Trochodendron aralioides HOM05D002503 ORTHO05D002810 8.2e-07 57.4 107 34.6
COL.COLO4_14103 Corchorus olitorius HOM05D002503 ORTHO05D002810 1.1e-06 57.0 92 37.0
Glyma.12G006500 Glycine max HOM05D002503 ORTHO05D002810 1.4e-06 56.6 107 35.5
PSO063G7581 Papaver somniferum HOM05D002503 ORTHO05D002810 1.4e-06 56.6 105 36.2
PSO782G2868 Papaver somniferum HOM05D002503 ORTHO05D002810 1.4e-06 56.6 105 36.2
Potri.003G107900 Populus trichocarpa HOM05D002503 ORTHO05D002810 1.4e-06 56.6 107 33.6
TWI14G0687 Tripterygium wilfordii HOM05D002503 ORTHO05D002810 1.8e-06 56.2 107 34.6
Atru.chr1.754 Acer truncatum HOM05D002503 ORTHO05D002810 2.4e-06 55.8 107 34.6
CSS0021538 Camellia sinensis var. sinensis HOM05D002503 ORTHO05D002810 3.1e-06 55.5 107 33.6
CSS0026455 Camellia sinensis var. sinensis HOM05D002503 ORTHO05D002810 3.1e-06 55.5 107 33.6
AUR62004152 Chenopodium quinoa HOM05D002503 ORTHO05D002810 3.1e-06 55.5 105 33.3
AUR62013695 Chenopodium quinoa HOM05D002503 ORTHO05D002810 3.1e-06 55.5 105 33.3
Glyma.09G229800 Glycine max HOM05D002503 ORTHO05D002810 3.1e-06 55.5 107 34.6
PGR042G2834 Punica granatum HOM05D002503 ORTHO05D002810 3.1e-06 55.5 107 33.6
Actinidia22770 Actinidia chinensis HOM05D002503 ORTHO05D002810 4.1e-06 55.1 107 33.6
Actinidia22824 Actinidia chinensis HOM05D002503 ORTHO05D002810 4.1e-06 55.1 107 33.6
ECA236G1621 Erigeron canadensis HOM05D002503 ORTHO05D002810 4.1e-06 55.1 107 33.6
Manes.14G036800 Manihot esculenta HOM05D002503 ORTHO05D002810 5.3e-06 54.7 92 39.1
GSVIVG01014046001 Vitis vinifera HOM05D002503 ORTHO05D002810 6.9e-06 54.3 103 35.0
Aqoxy5G03867 Aquilegia oxysepala HOM05D002503 ORTHO05D002810 9.1e-06 53.9 107 34.6
Cpa.g.c29748.1 Carica papaya HOM05D002503 ORTHO05D002810 9.1e-06 53.9 107 32.7
Ca_25533_v3 Cicer arietinum L. HOM05D002503 ORTHO05D002810 9.1e-06 53.9 107 35.5
Lj3g0006102 Lotus japonicus HOM05D002503 ORTHO05D002810 9.1e-06 53.9 107 34.6
Manes.01G269900 Manihot esculenta HOM05D002503 ORTHO05D002810 9.1e-06 53.9 116 31.0
Manes.05G050000 Manihot esculenta HOM05D002503 ORTHO05D002810 9.1e-06 53.9 107 33.6
TPR.G3641 Trifolium pratense HOM05D002503 ORTHO05D002810 9.1e-06 53.9 107 35.5


User provided reference genes

Program Settings