Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 1.1e-130 469.9 232 100.0
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 1.4e-109 399.8 233 85.0
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 1.2e-105 386.7 233 82.8
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 1.6e-105 386.3 233 83.3
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 2.7e-105 385.6 235 83.0
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 2.7e-105 385.6 235 83.4
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 1.0e-104 383.6 235 83.4
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 1.8e-104 382.9 233 82.4
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 3.4e-103 378.6 235 82.6
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 3.4e-103 378.6 235 82.6
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 9.8e-103 377.1 235 82.1
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 4.2e-98 361.7 233 78.5
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 8.3e-94 347.4 233 73.8
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 4.3e-82 308.5 196 79.1
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 1.8e-80 303.1 236 65.7
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 2.6e-79 299.3 232 65.9
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 2.2e-78 296.2 233 65.7
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 2.7e-76 289.3 233 63.1
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 2.3e-75 286.2 225 64.0
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 3.0e-75 285.8 225 65.3
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 3.9e-75 285.4 233 62.7
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 1.5e-74 283.5 226 62.8
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 3.3e-74 282.3 208 66.8
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 9.5e-74 280.8 180 74.4
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 2.8e-73 279.3 235 61.7
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 3.6e-73 278.9 172 77.9
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 4.7e-73 278.5 209 65.6
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 6.2e-73 278.1 234 61.1
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 6.2e-73 278.1 202 66.8
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 8.1e-73 277.7 167 78.4
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 8.1e-73 277.7 167 78.4
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 1.1e-72 277.3 235 61.3
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 1.4e-72 276.9 225 62.7
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 1.8e-72 276.6 206 68.0
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 1.8e-72 276.6 190 70.5
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 1.8e-72 276.6 167 77.8
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 1.8e-72 276.6 167 77.8
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 1.8e-72 276.6 205 66.3
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 2.3e-72 276.2 166 78.3
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 3.1e-72 275.8 234 61.1
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 5.2e-72 275.0 237 61.2
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 5.2e-72 275.0 233 61.4
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 5.2e-72 275.0 167 77.8
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 5.2e-72 275.0 167 77.8
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 6.8e-72 274.6 216 63.9
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 6.8e-72 274.6 218 62.4
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 1.2e-71 273.9 233 61.4
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 2.6e-71 272.7 180 72.2
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 3.4e-71 272.3 221 62.0
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 3.4e-71 272.3 228 61.8
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 5.8e-71 271.6 214 64.0
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 7.5e-71 271.2 169 75.1
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 1.7e-70 270.0 234 60.7
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 2.2e-70 269.6 167 75.4
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 2.2e-70 269.6 181 70.2
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 2.2e-70 269.6 237 59.1
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 2.9e-70 269.2 235 59.1
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 2.9e-70 269.2 167 76.0
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 3.7e-70 268.9 177 72.9
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 3.7e-70 268.9 177 72.9
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 6.4e-70 268.1 208 63.9
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 6.4e-70 268.1 223 60.1
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 8.3e-70 267.7 167 75.4
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 1.9e-69 266.5 226 59.3
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.9e-69 266.5 240 56.7
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 2.4e-69 266.2 235 57.9
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 3.2e-69 265.8 237 58.2
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 4.1e-69 265.4 225 62.2
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 4.1e-69 265.4 181 71.3
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 7.1e-69 264.6 167 73.7
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 9.2e-69 264.2 208 62.5
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 9.2e-69 264.2 167 73.7
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.2e-68 263.8 167 75.4
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 1.2e-68 263.8 167 74.9
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 1.6e-68 263.5 180 70.6
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 1.6e-68 263.5 227 58.6
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 2.1e-68 263.1 233 59.2
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 2.1e-68 263.1 167 74.9
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 2.7e-68 262.7 176 73.3
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 2.7e-68 262.7 167 75.4
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 2.7e-68 262.7 164 74.4
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 2.7e-68 262.7 173 72.8
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 6.0e-68 261.5 229 59.8
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 7.8e-68 261.2 176 71.6
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 1.0e-67 260.8 167 73.1
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 1.0e-67 260.8 167 74.3
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 1.0e-67 260.8 166 75.3
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.3e-67 260.4 167 71.9
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 1.7e-67 260.0 180 70.6
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 1.7e-67 260.0 167 73.1
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 3.0e-67 259.2 167 71.3
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 3.0e-67 259.2 210 61.4
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 3.0e-67 259.2 232 59.9
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 3.0e-67 259.2 173 72.3
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 5.1e-67 258.5 166 74.7
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 4.3e-66 255.4 173 72.8
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 9.5e-66 254.2 177 69.5
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 9.5e-66 254.2 163 73.6
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 1.2e-65 253.8 173 69.9
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 1.6e-65 253.4 167 71.9
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 2.8e-65 252.7 163 79.1
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 3.6e-65 252.3 167 69.5
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 3.6e-65 252.3 167 73.7
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 6.2e-65 251.5 166 71.7
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 6.8e-64 248.1 167 70.1
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 8.9e-64 247.7 166 71.1
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 1.2e-63 247.3 214 58.4
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 3.4e-63 245.7 166 72.9
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 5.8e-63 245.0 167 69.5
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 1.3e-62 243.8 155 75.5
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 1.1e-61 240.7 194 63.9
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 1.9e-61 240.0 219 54.3
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 5.4e-61 238.4 230 53.9
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 2.1e-60 236.5 273 49.1
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 2.1e-60 236.5 169 68.0
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 6.6e-59 231.5 166 69.3
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 6.6e-59 231.5 163 67.5
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 2.8e-57 226.1 182 63.7
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.7e-54 216.9 331 42.0
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 5.1e-51 205.3 180 53.3
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 1.3e-49 200.7 177 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 1.1e-48 197.6 167 55.1
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 1.4e-48 197.2 163 57.7
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 7.6e-47 191.4 128 71.9
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 2.2e-46 189.9 164 59.8
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 2.9e-46 189.5 167 53.9
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.2e-45 185.7 178 55.1
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 2.1e-44 183.3 164 57.3
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 7.9e-44 181.4 127 67.7
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.9e-43 179.1 125 67.2
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 2.8e-41 172.9 163 59.5
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 3.7e-41 172.6 194 46.4
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.3e-40 168.7 128 64.8
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.9e-38 162.2 166 51.8
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 1.4e-37 160.6 127 59.8
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 3.7e-33 146.0 178 51.1
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 8.2e-33 144.8 155 47.1
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 4.0e-32 142.5 128 57.8
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 6.9e-32 141.7 128 57.8
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 7.6e-31 138.3 91 68.1
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 2.1e-28 130.2 64 95.3
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 2.1e-28 130.2 64 95.3
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 2.2e-25 120.2 128 53.9
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 1.3e-22 110.9 161 42.2
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 9.4e-21 104.8 72 68.1
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 1.8e-19 100.5 71 66.2
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 9.7e-18 94.7 68 63.2
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 2.8e-17 93.2 71 59.2
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 2.9e-14 83.2 62 69.4
Cre05.g234657 Chlamydomonas reinhardtii HOM05D004609 ORTHO05D005537 5.1e-11 72.4 145 33.8
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 8.2e-09 65.1 42 71.4
Ca_29294_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 3.4e-07 59.7 134 29.1
PRCOL_00005540 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 5.9e-07 58.9 136 27.2
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 5.0e-06 55.8 144 27.1


User provided reference genes

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