Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04637 Brassica carinata HOM05D005476 ORTHO05D021669 2.6e-61 238.4 113 100.0
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.7e-15 86.3 51 80.4
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 2.2e-15 85.9 68 63.2
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.9e-15 85.5 78 55.1
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.9e-15 85.5 78 55.1
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 3.7e-15 85.1 68 63.2
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.4e-14 82.4 54 79.6
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 2.4e-14 82.4 54 79.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 9.2e-14 80.5 58 77.6
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.2e-13 80.1 54 81.5
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 1.2e-13 80.1 54 79.6
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 2.0e-13 79.3 54 75.9
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 3.5e-13 78.6 54 75.9
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.0e-12 77.0 67 61.2
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.0e-12 77.0 67 61.2
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 1.0e-12 77.0 67 61.2
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 1.7e-12 76.3 84 54.8
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 2.3e-12 75.9 67 58.2
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 1.9e-11 72.8 51 76.5
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 3.3e-11 72.0 57 64.9
BcaC02g11914 Brassica carinata HOM05D005476 ORTHO05D032808 1.2e-10 70.1 57 63.2
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.2e-07 59.3 42 71.4
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.9e-07 58.9 51 60.8
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 2.9e-07 58.9 51 60.8
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 3.7e-07 58.5 35 77.1
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 4.9e-07 58.2 39 74.4
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.9e-07 58.2 35 77.1
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.9e-07 58.2 35 77.1
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 6.4e-07 57.8 51 58.8
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 6.4e-07 57.8 51 58.8
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 6.4e-07 57.8 43 62.8
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.4e-06 55.8 51 56.9
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 2.4e-06 55.8 36 72.2
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 3.2e-06 55.5 34 73.5
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 4.1e-06 55.1 51 58.8
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 5.4e-06 54.7 76 47.4
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 5.4e-06 54.7 37 67.6
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 5.4e-06 54.7 47 61.7
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.1e-06 54.3 34 73.5
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.1e-06 54.3 34 73.5
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.1e-06 54.3 34 73.5
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 7.1e-06 54.3 33 75.8
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 7.1e-06 54.3 34 73.5
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 7.1e-06 54.3 34 73.5
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 7.1e-06 54.3 44 61.4
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 9.2e-06 53.9 38 65.8
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 9.2e-06 53.9 38 68.4


User provided reference genes

Program Settings