Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 3.9e-44 181.0 88 100.0
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 1.1e-43 179.5 88 98.9
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 1.1e-43 179.5 88 98.9
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 1.1e-43 179.5 88 98.9
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 1.1e-43 179.5 88 98.9
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 1.1e-43 179.5 88 98.9
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 1.5e-43 179.1 88 97.7
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 1.5e-43 179.1 88 97.7
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 1.5e-43 179.1 88 97.7
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 1.5e-43 179.1 88 97.7
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 1.5e-43 179.1 88 97.7
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 3.3e-43 177.9 88 96.6
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 4.3e-43 177.6 88 96.6
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 4.3e-43 177.6 88 96.6
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 4.3e-43 177.6 87 97.7
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 2.8e-42 174.9 88 95.5
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 6.9e-41 170.2 87 94.3
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 1.2e-40 169.5 87 94.3
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.3e-39 166.0 87 92.0
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 3.2e-38 161.4 87 86.2
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 3.2e-38 161.4 87 86.2
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 4.2e-38 161.0 87 86.2
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 5.4e-38 160.6 87 85.1
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 9.3e-38 159.8 86 90.7
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 2.1e-37 158.7 87 85.1
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 2.1e-37 158.7 87 85.1
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 2.1e-37 158.7 87 85.1
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.1e-37 158.7 87 85.1
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 2.1e-37 158.7 87 83.9
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 2.7e-37 158.3 87 83.9
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 2.7e-37 158.3 87 85.1
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 2.7e-37 158.3 87 83.9
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 4.6e-37 157.5 87 83.9
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 4.6e-37 157.5 87 83.9
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 4.6e-37 157.5 87 83.9
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 4.6e-37 157.5 87 83.9
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 4.6e-37 157.5 87 83.9
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 4.6e-37 157.5 87 83.9
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 4.6e-37 157.5 87 83.9
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 6.0e-37 157.1 87 83.9
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 6.0e-37 157.1 87 83.9
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 6.0e-37 157.1 87 83.9
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 6.0e-37 157.1 87 83.9
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 7.9e-37 156.8 87 83.9
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 7.9e-37 156.8 87 82.8
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 1.0e-36 156.4 87 82.8
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 1.0e-36 156.4 87 83.9
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.3e-36 156.0 87 83.9
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 1.3e-36 156.0 87 82.8
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 1.3e-36 156.0 87 82.8
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 1.8e-36 155.6 87 82.8
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 3.9e-36 154.5 87 82.8
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 5.1e-36 154.1 87 82.8
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 6.7e-36 153.7 143 60.1
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 6.7e-36 153.7 87 82.8
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 8.7e-36 153.3 87 81.6
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 1.1e-35 152.9 87 82.8
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 1.5e-35 152.5 87 81.6
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 1.9e-35 152.1 87 81.6
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 1.9e-35 152.1 87 80.5
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 1.9e-35 152.1 87 81.6
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 1.9e-35 152.1 87 81.6
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 1.9e-35 152.1 87 80.5
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 2.5e-35 151.8 87 78.2
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 2.5e-35 151.8 87 79.3
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 4.3e-35 151.0 87 80.5
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 4.3e-35 151.0 94 77.7
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 4.3e-35 151.0 87 81.6
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 5.6e-35 150.6 87 78.2
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 5.6e-35 150.6 87 78.2
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 5.6e-35 150.6 87 78.2
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 5.6e-35 150.6 87 78.2
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 5.6e-35 150.6 87 79.3
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 7.4e-35 150.2 87 78.2
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 1.3e-34 149.4 87 78.2
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 2.1e-34 148.7 87 79.3
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.1e-34 148.7 87 77.0
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 2.1e-34 148.7 87 79.3
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 2.1e-34 148.7 87 79.3
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.8e-34 148.3 84 81.0
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 2.8e-34 148.3 87 80.5
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 3.7e-34 147.9 87 78.2
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 4.8e-34 147.5 87 79.3
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 4.8e-34 147.5 87 78.2
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 8.1e-34 146.7 87 79.3
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 8.1e-34 146.7 87 78.2
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 8.1e-34 146.7 87 80.5
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 1.1e-33 146.4 87 79.3
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 1.4e-33 146.0 86 77.9
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 2.4e-33 145.2 87 77.0
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 3.1e-33 144.8 87 75.9
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 9.0e-33 143.3 87 74.7
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 9.0e-33 143.3 87 73.6
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 2.0e-32 142.1 87 73.6
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 2.0e-32 142.1 88 76.1
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 2.6e-32 141.7 87 74.7
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 3.4e-32 141.4 87 73.6
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 9.9e-32 139.8 87 73.6
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 1.3e-31 139.4 100 69.0
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.3e-31 139.4 76 82.9
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 2.9e-31 138.3 87 72.4
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 8.4e-31 136.7 87 70.1
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 1.1e-30 136.3 87 72.4
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 2.5e-30 135.2 140 52.9
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 3.2e-30 134.8 130 55.4
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 4.6e-29 131.0 75 82.7
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 3.3e-27 124.8 61 95.1
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 7.4e-27 123.6 84 73.8
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 3.8e-23 111.3 60 85.0
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 1.1e-22 109.8 86 59.3
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 1.9e-22 109.0 88 59.1
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 9.3e-22 106.7 64 71.9
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 9.3e-22 106.7 61 78.7
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 1.6e-21 105.9 66 72.7
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 2.1e-21 105.5 62 79.0
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 2.7e-21 105.1 61 77.0
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 2.7e-21 105.1 64 73.4
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 4.6e-21 104.4 64 70.3
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 4.6e-21 104.4 60 78.3
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 7.9e-21 103.6 90 55.6
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 7.9e-21 103.6 61 75.4
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 1.0e-20 103.2 60 78.3
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 2.3e-20 102.1 61 72.1
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 3.9e-20 101.3 61 73.8
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 1.1e-19 99.8 60 71.7
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 1.6e-18 95.9 86 52.3
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.7e-18 94.7 60 73.3
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 1.1e-17 93.2 57 73.7
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 9.4e-14 80.1 87 46.0
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 4.3e-11 71.2 50 68.0
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 2.8e-10 68.6 45 71.1
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 2.4e-09 65.5 42 71.4


User provided reference genes

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