Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04519 Brassica carinata HOM05D002034 ORTHO05D004251 2.6e-36 154.8 76 100.0
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 3.9e-32 141.0 73 93.2
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 5.6e-31 137.1 73 94.5
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 2.1e-30 135.2 73 90.4
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 2.8e-30 134.8 73 91.8
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 2.8e-30 134.8 73 94.5
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 3.6e-30 134.4 73 93.2
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 1.4e-29 132.5 73 90.4
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 8.9e-29 129.8 73 89.0
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 1.5e-28 129.0 73 89.0
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 7.5e-28 126.7 82 80.5
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 9.8e-28 126.3 73 87.7
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 2.2e-27 125.2 73 87.7
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 1.4e-26 122.5 73 79.5
C03p14280 Brassica napus HOM05D002034 ORTHO05D004251 4.6e-25 117.5 106 62.3
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 7.3e-23 110.2 74 71.6
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 2.8e-22 108.2 74 71.6
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 3.6e-22 107.8 74 71.6
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.1e-21 106.3 74 64.9
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.1e-21 106.3 74 64.9
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 1.1e-21 106.3 74 64.9
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 1.4e-21 105.9 74 67.6
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 1.4e-21 105.9 74 70.3
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 3.1e-21 104.8 74 67.6
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.1e-21 104.8 74 66.2
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.1e-21 104.8 74 66.2
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 3.1e-21 104.8 74 66.2
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 5.2e-21 104.0 74 66.2
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 6.8e-21 103.6 73 69.9
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 6.8e-21 103.6 75 69.3
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 8.9e-21 103.2 78 66.7
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 1.5e-20 102.4 74 63.5
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 2.0e-20 102.1 74 66.2
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 4.4e-20 100.9 74 66.2
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 4.4e-20 100.9 74 63.5
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 7.5e-20 100.1 74 63.5
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 7.5e-20 100.1 75 65.3
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 1.3e-19 99.4 75 65.3
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 3.7e-19 97.8 73 67.1
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 4.9e-19 97.4 74 63.5
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 4.9e-19 97.4 74 62.2
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.9e-19 97.4 61 70.5
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 8.3e-19 96.7 75 61.3
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 8.3e-19 96.7 75 61.3
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 8.3e-19 96.7 74 60.8
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 8.3e-19 96.7 73 65.8
Lalb_Chr15g0083121 Lupinus albus HOM05D002034 ORTHO05D004251 1.1e-18 96.3 64 65.6
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 1.4e-18 95.9 74 68.9
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 1.9e-18 95.5 55 74.5
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 1.9e-18 95.5 74 59.5
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 1.9e-18 95.5 74 59.5
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 1.9e-18 95.5 73 65.8
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 2.4e-18 95.1 73 64.4
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 2.4e-18 95.1 58 74.1
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 2.4e-18 95.1 76 63.2
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.4e-18 95.1 61 68.9
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 4.1e-18 94.4 90 56.7
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 4.1e-18 94.4 73 64.4
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 4.1e-18 94.4 73 63.0
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 5.4e-18 94.0 73 60.3
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 7.1e-18 93.6 73 63.0
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 7.1e-18 93.6 73 63.0
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 7.1e-18 93.6 73 60.3
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 9.2e-18 93.2 79 59.5
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 1.2e-17 92.8 62 67.7
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 1.2e-17 92.8 74 62.2
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 1.2e-17 92.8 78 65.4
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 1.2e-17 92.8 73 64.4
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 2.1e-17 92.0 55 72.7
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 3.5e-17 91.3 55 70.9
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 4.6e-17 90.9 76 60.5
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 4.6e-17 90.9 79 57.0
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 7.8e-17 90.1 60 68.3
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 7.8e-17 90.1 73 58.9
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.0e-16 89.7 73 61.6
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.7e-16 89.0 54 72.2
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.7e-16 89.0 54 72.2
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 1.7e-16 89.0 75 58.7
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 1.7e-16 89.0 73 63.0
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 2.3e-16 88.6 54 70.4
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 2.3e-16 88.6 53 73.6
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 3.0e-16 88.2 53 71.7
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 3.0e-16 88.2 79 54.4
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 6.6e-16 87.0 73 61.6
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 8.6e-16 86.7 60 66.7
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 8.6e-16 86.7 69 59.4
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.1e-15 86.3 73 61.6
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 1.1e-15 86.3 70 60.0
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.5e-15 85.9 54 66.7
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 1.9e-15 85.5 54 64.8
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 1.9e-15 85.5 77 59.7
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 4.3e-15 84.3 99 49.5
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 5.6e-15 84.0 52 71.2
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 7.3e-15 83.6 56 73.2
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 9.5e-15 83.2 54 66.7
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 9.5e-15 83.2 58 65.5
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 9.5e-15 83.2 52 73.1
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.2e-14 82.8 64 59.4
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 1.2e-14 82.8 55 69.1
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 1.6e-14 82.4 63 65.1
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 1.1e-13 79.7 87 51.7
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 2.4e-13 78.6 84 50.0
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 1.2e-12 76.3 73 54.8
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.2e-12 76.3 73 54.8
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.0e-12 75.5 63 54.0
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 1.7e-11 72.4 50 66.0
SEGI_39431 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 1.7e-11 72.4 50 66.0
VMungo0647G1991 Vigna mungo HOM05D002034 ORTHO05D004251 1.7e-11 72.4 55 58.2
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 4.9e-11 70.9 60 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 7.1e-10 67.0 72 48.6
SGA_v2.0_scaffold63G21659 Striga asiatica HOM05D002034 ORTHO05D004251 3.5e-09 64.7 39 69.2
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 1.3e-08 62.8 40 80.0
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.7e-08 62.4 61 50.8
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 1.7e-08 62.4 72 38.9
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 2.3e-08 62.0 54 53.7
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 8.7e-08 60.1 70 41.4
Pp3c20_20284 Physcomitrium patens HOM05D002034 ORTHO05D004251 8.7e-08 60.1 70 41.4


User provided reference genes

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