Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04496 Brassica carinata HOM05D010121 ORTHO05D013201 7.4e-95 350.5 175 100.0
C03p15900 Brassica napus HOM05D010121 ORTHO05D013201 1.6e-57 226.5 174 70.1
BolC3t14021H Brassica oleracea HOM05D010121 ORTHO05D013201 1.6e-57 226.5 174 70.1
A08p10750 Brassica napus HOM05D010121 ORTHO05D013201 1.0e-35 154.1 149 60.4
BraA08t33072Z Brassica rapa HOM05D010121 ORTHO05D013201 1.0e-35 154.1 149 60.4
BcaC03g13002 Brassica carinata HOM05D010121 ORTHO05D013201 8.6e-35 151.0 178 51.1
C02p01150 Brassica napus HOM05D010121 ORTHO05D013201 7.5e-31 137.9 206 45.1
C03p14160 Brassica napus HOM05D010121 ORTHO05D013201 1.3e-30 137.1 118 68.6
BraA02t04767Z Brassica rapa HOM05D010121 ORTHO05D013201 2.2e-30 136.3 163 51.5
BolC2t06105H Brassica oleracea HOM05D010121 ORTHO05D013201 8.3e-30 134.4 163 50.9
C03p13040 Brassica napus HOM05D010121 ORTHO05D013201 1.9e-29 133.3 121 65.3
C03p15930 Brassica napus HOM05D010121 ORTHO05D013201 2.3e-24 116.3 128 57.8
BolC3t13860H Brassica oleracea HOM05D010121 ORTHO05D013201 2.0e-23 113.2 102 65.7
BolC3t13766H Brassica oleracea HOM05D010121 ORTHO05D013201 2.2e-22 109.8 101 63.4
AL6G13010 Arabidopsis lyrata HOM05D000279 ORTHO05D013201 1.8e-16 90.1 133 45.1
Carub.0006s0236 Capsella rubella HOM05D000279 ORTHO05D018475 2.2e-14 83.2 134 44.0
C04p69710 Brassica napus HOM05D000279 ORTHO05D000498 3.7e-14 82.4 126 43.7
A04p32220 Brassica napus HOM05D000279 ORTHO05D000498 8.4e-14 81.3 126 43.7
BraA04t18676Z Brassica rapa HOM05D000279 ORTHO05D000498 8.4e-14 81.3 126 43.7
BcaNung05222 Brassica carinata HOM05D000279 ORTHO05D000498 1.4e-13 80.5 126 43.7
C04p69720 Brassica napus HOM05D000279 ORTHO05D000498 1.4e-13 80.5 110 48.2
BolC4t28470H Brassica oleracea HOM05D000279 ORTHO05D000498 1.4e-13 80.5 126 43.7
Sp4g24600 Schrenkiella parvula HOM05D000279 ORTHO05D000498 2.4e-13 79.7 127 42.5
C03p01580 Brassica napus HOM05D010121 ORTHO05D018475 3.2e-13 79.3 132 44.7
BcaB06g29246 Brassica carinata HOM05D000279 ORTHO05D000498 4.1e-13 79.0 110 46.4
Carub.0004s2486 Capsella rubella HOM05D000279 ORTHO05D000498 9.2e-13 77.8 132 38.6
CARHR137500 Cardamine hirsuta HOM05D000279 ORTHO05D000498 1.2e-12 77.4 125 41.6
A04p32230 Brassica napus HOM05D000279 ORTHO05D000498 1.6e-12 77.0 110 46.4
BraA04t18677Z Brassica rapa HOM05D000279 ORTHO05D000498 1.6e-12 77.0 110 46.4
BcaB06g29247 Brassica carinata HOM05D000279 ORTHO05D000498 2.1e-12 76.6 110 44.5
BcaNung05221 Brassica carinata HOM05D000279 ORTHO05D000498 2.1e-12 76.6 110 44.5
AL4G40950 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 2.7e-12 76.3 132 39.4
BcaB01g05816 Brassica carinata HOM05D000279 ORTHO05D000498 2.7e-12 76.3 127 44.9
C03p28200 Brassica napus HOM05D000279 ORTHO05D000498 3.5e-12 75.9 130 36.9
BolC4t28471H Brassica oleracea HOM05D000279 ORTHO05D000498 3.5e-12 75.9 110 45.5
A03p23650 Brassica napus HOM05D000279 ORTHO05D000498 4.6e-12 75.5 130 36.9
BraA03t11581Z Brassica rapa HOM05D000279 ORTHO05D000498 4.6e-12 75.5 130 36.9
BolC3t15191H Brassica oleracea HOM05D000279 ORTHO05D000498 6.0e-12 75.1 117 39.3
CARHR137510 Cardamine hirsuta HOM05D000279 ORTHO05D000498 1.0e-11 74.3 133 39.8
AL4G40910 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 5.1e-11 72.0 133 39.1
BcaB01g05831 Brassica carinata HOM05D000279 ORTHO05D000498 6.6e-11 71.6 127 43.3
C03p01570 Brassica napus HOM05D000279 ORTHO05D000498 6.6e-11 71.6 127 43.3
Thhalv10014790m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 1.1e-10 70.9 121 42.1
AT2G42465 Arabidopsis thaliana HOM05D000279 ORTHO05D000498 1.5e-10 70.5 132 37.1
A04p02620 Brassica napus HOM05D000279 ORTHO05D000498 1.9e-10 70.1 145 34.5
Carub.0005s2514 Capsella rubella HOM05D000279 ORTHO05D000498 2.5e-10 69.7 135 35.6
A04p32240 Brassica napus HOM05D000279 ORTHO05D000498 3.3e-10 69.3 141 37.6
BcaB01g05830 Brassica carinata HOM05D010121 ORTHO05D018475 4.3e-10 68.9 105 46.7
AL4G40960 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 5.6e-10 68.6 141 39.7
CARHR168700 Cardamine hirsuta HOM05D000279 ORTHO05D000498 5.6e-10 68.6 131 38.2
BcaB05g21826 Brassica carinata HOM05D010121 ORTHO05D095656 7.3e-10 68.2 75 60.0
BraA04t15988Z Brassica rapa HOM05D000279 ORTHO05D000498 7.3e-10 68.2 145 35.2
BcaNung03085 Brassica carinata HOM05D010121 ORTHO05D018475 9.6e-10 67.8 130 40.8
BcaC04g22242 Brassica carinata HOM05D000279 ORTHO05D000498 1.6e-09 67.0 132 40.2
CARHR209780 Cardamine hirsuta HOM05D000279 ORTHO05D018475 1.6e-09 67.0 137 37.2
Thhalv10023616m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 1.6e-09 67.0 133 36.8
AL5G40060 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 2.1e-09 66.6 131 35.9
BcaC02g07237 Brassica carinata HOM05D000279 ORTHO05D000498 2.1e-09 66.6 110 42.7
BcaB02g08268 Brassica carinata HOM05D000279 ORTHO05D000498 2.8e-09 66.2 146 32.9
AT3G58270 Arabidopsis thaliana HOM05D000279 ORTHO05D000498 3.6e-09 65.9 146 33.6
AT3G58380 Arabidopsis thaliana HOM05D000279 ORTHO05D000498 3.6e-09 65.9 149 34.9
BcaB06g29249 Brassica carinata HOM05D000279 ORTHO05D000498 3.6e-09 65.9 123 35.0
Sp5g04500 Schrenkiella parvula HOM05D000279 ORTHO05D000498 3.6e-09 65.9 135 36.3
BolC9t55078H Brassica oleracea HOM05D000279 ORTHO05D000498 4.7e-09 65.5 132 39.4
Thhalv10006449m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 4.7e-09 65.5 133 36.1
AL5G40000 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 6.2e-09 65.1 136 36.8
AL6G13000 Arabidopsis lyrata HOM05D010121 ORTHO05D013201 6.2e-09 65.1 93 49.5
BcaB02g08267 Brassica carinata HOM05D000279 ORTHO05D000498 6.2e-09 65.1 135 34.1
BolC4t21996H Brassica oleracea HOM05D000279 ORTHO05D000498 6.2e-09 65.1 117 37.6
AL5G39920 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 8.1e-09 64.7 149 32.2
BraA09t37371Z Brassica rapa HOM05D000279 ORTHO05D000498 8.1e-09 64.7 132 39.4
CARHR168640 Cardamine hirsuta HOM05D000279 ORTHO05D000498 1.1e-08 64.3 167 32.9
AL5G39980 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 1.4e-08 63.9 134 33.6
Thhalv10023996m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 1.4e-08 63.9 136 34.6
A09p17440 Brassica napus HOM05D000279 ORTHO05D000498 1.8e-08 63.5 132 38.6
A05p02990 Brassica napus HOM05D000279 ORTHO05D000498 2.4e-08 63.2 139 36.0
AT2G42470 Arabidopsis thaliana HOM05D000279 ORTHO05D000498 3.1e-08 62.8 141 36.9
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 3.1e-08 62.8 102 45.1
Thhalv10023572m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 3.1e-08 62.8 132 37.1
AL5G40080 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 4.0e-08 62.4 131 34.4
BcaC02g07238 Brassica carinata HOM05D000279 ORTHO05D000498 4.0e-08 62.4 126 38.1
BolC4t21997H Brassica oleracea HOM05D000279 ORTHO05D000498 4.0e-08 62.4 125 35.2
BolC4t25117H Brassica oleracea HOM05D000279 ORTHO05D000498 4.0e-08 62.4 132 39.4
Carub.0005s2508 Capsella rubella HOM05D000279 ORTHO05D000498 4.0e-08 62.4 146 30.8
AL2G15770 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 5.2e-08 62.0 130 36.2
C04p34100 Brassica napus HOM05D000279 ORTHO05D000498 5.2e-08 62.0 145 32.4
BolC4t24973H Brassica oleracea HOM05D000279 ORTHO05D000498 5.2e-08 62.0 145 32.4
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 6.8e-08 61.6 102 45.1
BcaC02g10002 Brassica carinata HOM05D000279 ORTHO05D000498 8.9e-08 61.2 134 32.1
C04p03610 Brassica napus HOM05D000279 ORTHO05D000498 8.9e-08 61.2 117 35.9
BcaC02g09769 Brassica carinata HOM05D000279 ORTHO05D000498 1.2e-07 60.8 114 43.0
A05p03000 Brassica napus HOM05D000279 ORTHO05D000498 1.2e-07 60.8 117 35.9
Sp6g09200 Schrenkiella parvula HOM05D000279 ORTHO05D000498 1.2e-07 60.8 133 31.6
AT5G03550 Arabidopsis thaliana HOM05D010121 ORTHO05D018475 1.5e-07 60.5 93 46.2
AL4G40940 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 2.0e-07 60.1 126 37.3
BcaB01g05815 Brassica carinata HOM05D010121 ORTHO05D018475 2.0e-07 60.1 115 44.3
BcaC06g33025 Brassica carinata HOM05D010121 ORTHO05D018475 2.0e-07 60.1 115 44.3
BcaC07g40261 Brassica carinata HOM05D000279 ORTHO05D000498 2.0e-07 60.1 158 32.3
Thhalv10024005m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 2.0e-07 60.1 132 34.1
AL5G40140 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 2.6e-07 59.7 146 31.5
BraA04t15989Z Brassica rapa HOM05D000279 ORTHO05D000498 2.6e-07 59.7 131 32.1
Sp5g21580 Schrenkiella parvula HOM05D000279 ORTHO05D000498 2.6e-07 59.7 117 37.6
BraA09t40545Z Brassica rapa HOM05D000279 ORTHO05D000498 3.4e-07 59.3 154 31.8
Carub.0005s2515 Capsella rubella HOM05D000279 ORTHO05D000498 3.4e-07 59.3 133 34.6
AL4G40970 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 4.4e-07 58.9 121 33.1
AL5G40110 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 4.4e-07 58.9 133 32.3
AT3G58360 Arabidopsis thaliana HOM05D000279 ORTHO05D000498 4.4e-07 58.9 145 31.7
BcaB02g08264 Brassica carinata HOM05D000279 ORTHO05D000498 4.4e-07 58.9 146 32.2
A04p02630 Brassica napus HOM05D000279 ORTHO05D000498 4.4e-07 58.9 131 31.3
Sp4g24610 Schrenkiella parvula HOM05D000279 ORTHO05D000498 4.4e-07 58.9 101 39.6
AL4G41010 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 5.8e-07 58.5 119 36.1
AL5G40050 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 5.8e-07 58.5 146 30.8
Carub.0006s0237 Capsella rubella HOM05D000279 ORTHO05D013201 5.8e-07 58.5 119 42.0
Thhalv10008254m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 5.8e-07 58.5 130 33.8
Thhalv10024153m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 5.8e-07 58.5 117 35.0
AT3G58250 Arabidopsis thaliana HOM05D000279 ORTHO05D000498 7.6e-07 58.2 126 32.5
A05p03010 Brassica napus HOM05D000279 ORTHO05D000498 7.6e-07 58.2 134 34.3
Thhalv10026867m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 7.6e-07 58.2 112 34.8
AT3G58300 Arabidopsis thaliana HOM05D000279 ORTHO05D000498 9.9e-07 57.8 131 31.3
A09p68620 Brassica napus HOM05D000279 ORTHO05D000498 9.9e-07 57.8 132 33.3
C03p14140 Brassica napus HOM05D010121 ORTHO05D013201 9.9e-07 57.8 53 54.7
BraA09t42204Z Brassica rapa HOM05D000279 ORTHO05D000498 9.9e-07 57.8 132 33.3
Carub.0005s2511 Capsella rubella HOM05D000279 ORTHO05D000498 9.9e-07 57.8 131 30.5
Thhalv10006397m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 9.9e-07 57.8 141 29.8
AL3G42870 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 1.3e-06 57.4 133 30.1
BcaB02g07542 Brassica carinata HOM05D000279 ORTHO05D000498 1.3e-06 57.4 146 29.5
A09p50970 Brassica napus HOM05D000279 ORTHO05D000498 1.3e-06 57.4 115 34.8
C08p06040 Brassica napus HOM05D000279 ORTHO05D000498 1.3e-06 57.4 107 32.7
CARHR168830 Cardamine hirsuta HOM05D000279 ORTHO05D000498 1.3e-06 57.4 147 31.3
Sp5g04457 Schrenkiella parvula HOM05D000279 ORTHO05D000498 1.3e-06 57.4 148 33.1
AL5G39940 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 1.7e-06 57.0 138 34.8
A09p50980 Brassica napus HOM05D000279 ORTHO05D000498 1.7e-06 57.0 133 33.1
C02p12630 Brassica napus HOM05D000279 ORTHO05D000498 1.7e-06 57.0 132 33.3
Sp2g04170 Schrenkiella parvula HOM05D000279 ORTHO05D000498 1.7e-06 57.0 115 35.7
AL5G39960 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 2.2e-06 56.6 128 31.2
AT3G58260 Arabidopsis thaliana HOM05D000279 ORTHO05D000498 2.2e-06 56.6 130 33.1
C01p36970 Brassica napus HOM05D000279 ORTHO05D000498 2.2e-06 56.6 133 34.6
BolC6t37686H Brassica oleracea HOM05D000279 ORTHO05D000498 2.2e-06 56.6 134 29.1
AL5G40160 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 2.9e-06 56.2 147 32.7
A10p23460 Brassica napus HOM05D000279 ORTHO05D000498 2.9e-06 56.2 134 33.6
Carub.0004s2488 Capsella rubella HOM05D000279 ORTHO05D000498 2.9e-06 56.2 118 35.6
BcaC04g22238 Brassica carinata HOM05D000279 ORTHO05D000498 3.8e-06 55.8 131 36.6
BraA01t03006Z Brassica rapa HOM05D000279 ORTHO05D000498 3.8e-06 55.8 117 30.8
CARHR168660 Cardamine hirsuta HOM05D000279 ORTHO05D000498 3.8e-06 55.8 131 30.5
Thhalv10005920m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 3.8e-06 55.8 146 30.1
Sp5g04450 Schrenkiella parvula HOM05D000279 ORTHO05D000498 3.8e-06 55.8 132 34.1
Sp5g04490 Schrenkiella parvula HOM05D000279 ORTHO05D000498 3.8e-06 55.8 131 29.0
AL2G11470 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 4.9e-06 55.5 152 29.6
BcaB07g31218 Brassica carinata HOM05D000279 ORTHO05D000498 4.9e-06 55.5 132 37.1
C04p36820 Brassica napus HOM05D000279 ORTHO05D017442 4.9e-06 55.5 91 47.3
BraA05t19289Z Brassica rapa HOM05D000279 ORTHO05D000498 4.9e-06 55.5 134 31.3
CARHR168630 Cardamine hirsuta HOM05D000279 ORTHO05D000498 4.9e-06 55.5 118 33.9
AL5G40130 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 6.4e-06 55.1 148 31.8
A09p51000 Brassica napus HOM05D000279 ORTHO05D000498 6.4e-06 55.1 134 32.1
C04p32290 Brassica napus HOM05D000279 ORTHO05D000498 6.4e-06 55.1 132 32.6
BraA06t27147Z Brassica rapa HOM05D000279 ORTHO05D000498 6.4e-06 55.1 132 34.8
BraA09t40544Z Brassica rapa HOM05D000279 ORTHO05D000498 6.4e-06 55.1 115 33.9
Sp7g05400 Schrenkiella parvula HOM05D000279 ORTHO05D000498 6.4e-06 55.1 133 28.6
SpUn0053_0040 Schrenkiella parvula HOM05D000279 ORTHO05D000498 6.4e-06 55.1 133 28.6
AL1G20340 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 8.4e-06 54.7 108 37.0
AL5G40090 Arabidopsis lyrata HOM05D000279 ORTHO05D000498 8.4e-06 54.7 100 36.0
BcaB02g07530 Brassica carinata HOM05D000279 ORTHO05D000498 8.4e-06 54.7 130 32.3
A04p02590 Brassica napus HOM05D000279 ORTHO05D000498 8.4e-06 54.7 142 31.7
C04p03620 Brassica napus HOM05D000279 ORTHO05D000498 8.4e-06 54.7 137 34.3
Carub.0004s2491 Capsella rubella HOM05D000279 ORTHO05D000498 8.4e-06 54.7 130 31.5
CARHR168600 Cardamine hirsuta HOM05D000279 ORTHO05D000498 8.4e-06 54.7 125 30.4
Thhalv10017071m.g Eutrema salsugineum HOM05D000279 ORTHO05D000498 8.4e-06 54.7 82 42.7


User provided reference genes

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