Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 6.8e-210 733.8 382 100.0
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 6.5e-128 461.5 414 66.9
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 6.1e-126 454.9 413 66.6
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 3.1e-122 442.6 415 65.3
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 2.5e-119 433.0 402 65.7
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 1.6e-118 430.3 477 57.7
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 3.1e-61 240.0 391 45.0
BcaB01g04545 Brassica carinata HOM05D012436 ORTHO05D003476 8.4e-59 231.9 260 56.2
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 7.8e-49 198.7 385 40.8
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 6.0e-33 146.0 386 33.7
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 6.0e-33 146.0 376 34.6
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 7.9e-33 145.6 425 32.5
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.9e-26 124.4 395 31.1
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 5.7e-23 112.8 378 30.7
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.0e-11 75.5 344 24.1
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.3e-11 75.1 92 45.7
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.2e-11 74.3 142 35.2
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.9e-11 73.9 349 26.9
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 3.8e-11 73.6 129 38.8
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.1e-10 72.0 340 26.5
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 2.5e-10 70.9 68 48.5
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 2.5e-10 70.9 69 49.3
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 2.5e-10 70.9 72 45.8
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 4.2e-10 70.1 86 44.2
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 5.5e-10 69.7 105 36.2
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 7.2e-10 69.3 71 43.7
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 9.4e-10 68.9 139 35.3
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 1.2e-09 68.6 157 31.2
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.2e-09 68.6 139 34.5
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 3.6e-09 67.0 71 40.8
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 4.6e-09 66.6 62 53.2
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 4.6e-09 66.6 105 38.1
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 4.6e-09 66.6 80 43.8
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 6.1e-09 66.2 62 50.0
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 7.9e-09 65.9 71 46.5
EL10Ac9g22929 Beta vulgaris HOM05D008057 ORTHO05D003476 1.0e-08 65.5 178 31.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 1.0e-08 65.5 52 53.8
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 1.4e-08 65.1 121 33.9
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.3e-08 64.3 62 48.4
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 2.3e-08 64.3 166 33.1
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.3e-08 64.3 74 43.2
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.0e-08 63.9 136 31.6
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 3.9e-08 63.5 55 52.7
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.9e-08 63.5 110 33.6
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 5.1e-08 63.2 68 44.1
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 8.8e-08 62.4 80 43.8
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 8.8e-08 62.4 270 26.3
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.1e-07 62.0 244 27.5
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.1e-07 62.0 375 22.4
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.1e-07 62.0 375 22.4
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 1.1e-07 62.0 198 29.3
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.5e-07 61.6 350 24.9
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.5e-07 61.6 361 22.7
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 2.0e-07 61.2 54 46.3
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 2.0e-07 61.2 146 29.5
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 2.5e-07 60.8 90 36.7
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 2.5e-07 60.8 146 30.1
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 2.5e-07 60.8 390 23.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 2.5e-07 60.8 50 54.0
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 2.5e-07 60.8 52 53.8
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.3e-07 60.5 116 32.8
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 3.3e-07 60.5 344 26.2
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 3.3e-07 60.5 116 32.8
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 3.3e-07 60.5 112 35.7
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 3.3e-07 60.5 136 30.9
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 4.3e-07 60.1 152 28.3
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 4.3e-07 60.1 54 48.1
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 4.3e-07 60.1 310 26.5
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 4.3e-07 60.1 149 30.9
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 5.7e-07 59.7 73 39.7
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 5.7e-07 59.7 60 50.0
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 5.7e-07 59.7 54 48.1
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 5.7e-07 59.7 93 37.6
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 7.4e-07 59.3 385 24.4
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 7.4e-07 59.3 101 34.7
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 7.4e-07 59.3 147 30.6
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 9.7e-07 58.9 74 35.1
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 9.7e-07 58.9 71 40.8
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 1.3e-06 58.5 74 40.5
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.3e-06 58.5 212 26.4
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 1.3e-06 58.5 170 28.8
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 1.3e-06 58.5 109 39.4
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.7e-06 58.2 50 44.0
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.7e-06 58.2 75 40.0
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.7e-06 58.2 54 46.3
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 1.7e-06 58.2 60 48.3
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.7e-06 58.2 144 29.2
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 1.7e-06 58.2 42 61.9
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 1.7e-06 58.2 50 46.0
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 2.2e-06 57.8 55 49.1
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 2.2e-06 57.8 95 33.7
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 2.2e-06 57.8 50 48.0
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.2e-06 57.8 50 48.0
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 2.8e-06 57.4 178 27.0
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.8e-06 57.4 50 48.0
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.8e-06 57.4 50 48.0
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.8e-06 57.4 50 48.0
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 3.7e-06 57.0 52 50.0
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 3.7e-06 57.0 50 48.0
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 4.8e-06 56.6 120 32.5
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.8e-06 56.6 50 48.0
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 4.8e-06 56.6 54 44.4
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 6.3e-06 56.2 245 26.9
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 6.3e-06 56.2 50 46.0
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 6.3e-06 56.2 108 31.5
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 8.2e-06 55.8 91 39.6
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 8.2e-06 55.8 82 34.1


User provided reference genes

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