Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 2.3e-105 385.6 198 100.0
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 2.0e-96 355.9 198 91.9
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 4.4e-96 354.8 198 92.4
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 2.4e-94 349.0 199 91.5
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 1.2e-93 346.7 198 89.9
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 1.5e-91 339.7 198 88.9
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 2.8e-90 335.5 193 89.6
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 2.8e-90 335.5 193 89.6
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 4.7e-90 334.7 196 88.8
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 4.7e-90 334.7 196 89.3
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 1.1e-89 333.6 193 90.2
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 1.1e-89 333.6 193 90.2
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.4e-89 333.2 196 89.3
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 1.4e-89 333.2 195 87.7
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 5.2e-89 331.3 197 87.8
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 2.0e-88 329.3 193 88.6
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 2.6e-88 328.9 203 84.7
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 9.9e-88 327.0 184 89.7
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.3e-82 310.1 215 77.2
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 2.0e-72 276.2 197 72.6
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 4.8e-66 255.0 200 64.5
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 6.2e-66 254.6 198 63.1
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.4e-65 253.4 194 65.5
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.4e-65 253.4 195 64.6
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 3.1e-65 252.3 201 63.7
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 9.0e-65 250.8 191 63.9
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.2e-64 250.4 197 64.5
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 4.5e-64 248.4 195 63.6
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 7.6e-64 247.7 195 63.1
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 1.0e-63 247.3 197 64.5
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 2.2e-63 246.1 194 62.9
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 3.8e-63 245.4 198 65.2
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 8.4e-63 244.2 197 64.0
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 1.1e-62 243.8 200 61.0
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 1.1e-62 243.8 191 63.4
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 1.4e-62 243.4 193 65.3
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 3.2e-62 242.3 201 63.7
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 3.2e-62 242.3 200 64.0
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.2e-62 241.9 200 60.5
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 7.1e-62 241.1 197 61.9
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 7.1e-62 241.1 197 61.9
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 7.1e-62 241.1 200 63.5
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.6e-61 240.0 195 62.1
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 2.1e-61 239.6 201 62.7
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.1e-61 239.6 200 60.5
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 2.1e-61 239.6 195 62.6
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 2.7e-61 239.2 196 62.8
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 4.6e-61 238.4 197 60.9
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 7.9e-61 237.7 197 62.9
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 7.9e-61 237.7 193 61.1
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.0e-60 237.3 186 66.7
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.3e-60 236.9 195 61.0
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 1.8e-60 236.5 190 62.6
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 6.7e-60 234.6 186 65.1
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.1e-59 233.8 195 63.1
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.1e-59 233.8 194 62.9
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.5e-59 233.4 191 63.4
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.9e-59 233.0 191 60.7
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.9e-59 233.0 192 62.0
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.9e-59 233.0 189 61.9
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.5e-59 232.6 191 60.7
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 5.7e-59 231.5 189 61.9
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 5.7e-59 231.5 211 58.3
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 7.4e-59 231.1 194 60.3
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 7.4e-59 231.1 184 62.5
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 3.7e-58 228.8 191 60.7
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 4.8e-58 228.4 190 58.4
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 8.2e-58 227.6 197 58.4
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 1.4e-57 226.9 188 60.6
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.4e-57 226.9 198 58.6
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 5.3e-57 224.9 187 60.4
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 6.9e-57 224.6 198 59.1
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 1.5e-56 223.4 187 62.6
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 3.4e-56 222.2 194 59.8
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 4.5e-56 221.9 194 59.8
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 5.9e-56 221.5 217 54.8
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 7.6e-56 221.1 204 57.4
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 1.0e-55 220.7 196 58.2
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 3.8e-55 218.8 253 48.6
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.1e-54 217.2 198 55.6
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 2.5e-54 216.1 192 58.9
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 2.5e-54 216.1 194 58.8
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 5.5e-54 214.9 284 45.8
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 5.5e-54 214.9 242 50.8
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 1.0e-52 210.7 199 58.8
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 6.7e-52 208.0 158 65.8
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.3e-51 205.3 166 61.4
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 5.7e-51 204.9 196 58.2
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 1.2e-48 197.2 142 66.2
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.6e-48 196.1 186 52.2
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 2.6e-48 196.1 195 55.9
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 3.4e-48 195.7 146 67.1
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 2.9e-47 192.6 230 47.8
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 5.5e-46 188.3 300 41.0
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 1.2e-45 187.2 186 54.3
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 3.0e-44 182.6 187 54.0
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.5e-43 180.3 186 54.8
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 6.3e-42 174.9 179 49.2
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 4.1e-41 172.2 333 36.6
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 6.9e-41 171.4 149 57.0
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 5.9e-40 168.3 152 57.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 5.0e-39 165.2 155 56.1
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 4.2e-38 162.2 198 47.5
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.1e-37 159.8 121 65.3
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 2.1e-37 159.8 194 44.8
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 3.9e-36 155.6 197 46.2
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 8.8e-36 154.5 123 63.4
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 8.8e-36 154.5 146 52.1
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.6e-32 143.7 187 42.8
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 1.6e-32 143.7 194 45.4
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 2.6e-32 142.9 113 64.6
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 6.5e-31 138.3 99 67.7
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 5.3e-25 118.6 93 58.1
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 5.9e-24 115.2 102 54.9
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 6.5e-23 111.7 186 40.3
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.1e-22 110.9 136 49.3
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 1.5e-22 110.5 103 56.3
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 4.2e-22 109.0 121 47.9
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.8e-18 96.3 88 56.8
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.7e-18 95.9 150 36.7
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 5.4e-17 92.0 75 60.0
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 4.5e-16 89.0 55 80.0
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 7.7e-16 88.2 53 81.1
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 7.7e-16 88.2 53 81.1
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 6.5e-15 85.1 69 60.9
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.2e-14 81.6 89 48.3
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 7.2e-14 81.6 163 35.6
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 9.4e-14 81.3 90 46.7
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 8.0e-13 78.2 89 43.8
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 3.0e-12 76.3 56 64.3
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.0e-12 75.9 89 43.8
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.2e-11 74.3 190 33.7
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.4e-11 72.8 52 63.5
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 1.8e-09 67.0 57 63.2
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 2.4e-09 66.6 95 48.4
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.1e-09 65.9 49 63.3
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.6e-08 63.9 86 45.3


User provided reference genes

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