Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04471 Brassica carinata HOM05D006119 ORTHO05D007641 3.8e-63 244.6 117 100.0
C03p14650 Brassica napus HOM05D006119 ORTHO05D007641 1.2e-61 239.6 117 97.4
CARHR271810 Cardamine hirsuta HOM05D006119 ORTHO05D007641 4.8e-58 227.6 116 92.2
Thhalv10015049m.g Eutrema salsugineum HOM05D006119 ORTHO05D007641 1.8e-57 225.7 117 92.3
AL8G34100 Arabidopsis lyrata HOM05D006119 ORTHO05D007641 2.4e-57 225.3 117 89.7
AT5G58005 Arabidopsis thaliana HOM05D006119 ORTHO05D007641 4.1e-57 224.6 117 89.7
Carub.0008s1855 Capsella rubella HOM05D006119 ORTHO05D007641 1.6e-56 222.6 117 88.9
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 1.7e-55 219.2 111 93.7
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 1.7e-55 219.2 111 93.7
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 1.7e-55 219.2 111 93.7
Aa31LG3G13820 Aethionema arabicum HOM05D006119 ORTHO05D007641 1.9e-54 215.7 118 88.1
Manes.06G037000 Manihot esculenta HOM05D006119 ORTHO05D007641 6.5e-47 190.7 115 74.8
Haze_19227 Corylus avellana HOM05D006119 ORTHO05D007641 4.2e-46 188.0 115 76.5
arahy.Tifrunner.gnm1.ann1.I28AR0 Arachis hypogaea HOM05D006119 ORTHO05D007641 9.4e-46 186.8 114 74.6
Cfa020842 Carpinus fangiana HOM05D006119 ORTHO05D007641 9.4e-46 186.8 115 75.7
QL02p092825 Quercus lobata HOM05D006119 ORTHO05D007641 1.2e-45 186.4 113 75.2
CiPaw.15G174900 Carya illinoinensis HOM05D006119 ORTHO05D007641 2.7e-45 185.3 112 75.0
arahy.Tifrunner.gnm1.ann1.TAM15G Arachis hypogaea HOM05D006119 ORTHO05D007641 1.0e-44 183.3 114 73.7
PGR102G3064 Punica granatum HOM05D006119 ORTHO05D007641 2.3e-44 182.2 113 72.6
Ciclev10009941m.g Citrus clementina HOM05D006119 ORTHO05D007641 2.0e-43 179.1 115 73.0
Gorai.009G055300 Gossypium raimondii HOM05D006119 ORTHO05D007641 2.8e-42 175.3 117 67.5
CSS0002774 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 3.7e-42 174.9 113 69.0
CSS0027400 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 3.7e-42 174.9 113 69.0
Lj4g0015042 Lotus japonicus HOM05D006119 ORTHO05D007641 3.7e-42 174.9 113 71.7
Potri.006G186500 Populus trichocarpa HOM05D006119 ORTHO05D007641 4.8e-42 174.5 117 68.4
Thecc.09G032800 Theobroma cacao HOM05D006119 ORTHO05D007641 6.3e-42 174.1 115 68.7
TAR626G1228 Trochodendron aralioides HOM05D006119 ORTHO05D007641 1.1e-41 173.3 111 71.2
Cpa.g.sc46.139 Carica papaya HOM05D006119 ORTHO05D007641 1.8e-41 172.6 100 79.0
Oeu038007.1 Olea europaea HOM05D006119 ORTHO05D007641 4.1e-41 171.4 115 67.8
Sabra18G0092300 Salix brachista HOM05D006119 ORTHO05D007641 4.1e-41 171.4 117 65.8
Hma1.2p1_0028F.1_g017420 Hydrangea macrophylla HOM05D006119 ORTHO05D007641 5.4e-41 171.0 113 68.1
Sed0003082 Sechium edule HOM05D006119 ORTHO05D007641 5.4e-41 171.0 113 69.0
Migut.K00337 Erythranthe guttata HOM05D006119 ORTHO05D007641 7.0e-41 170.6 112 68.8
Potri.018G109400 Populus trichocarpa HOM05D006119 ORTHO05D007641 9.1e-41 170.2 117 66.7
CDE05G1219 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 1.6e-40 169.5 113 67.3
Ca_21116_v3 Cicer arietinum L. HOM05D006119 ORTHO05D007641 1.6e-40 169.5 115 67.8
ClCG06G012280 Citrullus lanatus HOM05D006119 ORTHO05D007641 2.0e-40 169.1 112 68.8
TAR625G1054 Trochodendron aralioides HOM05D006119 ORTHO05D007641 5.9e-40 167.5 111 68.5
HPP92_017474 Vanilla planifolia HOM05D006119 ORTHO05D007641 7.7e-40 167.2 99 77.8
Manes.14G112500 Manihot esculenta HOM05D006119 ORTHO05D007641 1.3e-39 166.4 103 75.7
RhsimUnG0039700 Rhododendron simsii HOM05D006119 ORTHO05D007641 1.3e-39 166.4 107 70.1
Hund00673 Selenicereus undatus HOM05D006119 ORTHO05D007641 1.3e-39 166.4 110 67.3
Lsat_1_v5_gn_5_91501 Lactuca sativa HOM05D006119 ORTHO05D007641 3.8e-39 164.9 111 66.7
Glyma.02G202700 Glycine max HOM05D006119 ORTHO05D007641 5.0e-39 164.5 100 74.0
Medtr4g131150 Medicago truncatula HOM05D006119 ORTHO05D007641 5.0e-39 164.5 116 64.7
SGA_v2.0_scaffold206G41813 Striga asiatica HOM05D006119 ORTHO05D007641 5.0e-39 164.5 116 65.5
Actinidia23551 Actinidia chinensis HOM05D006119 ORTHO05D007641 1.9e-38 162.5 113 66.4
Eucgr.L03135 Eucalyptus grandis HOM05D006119 ORTHO05D007641 1.9e-38 162.5 110 64.5
Peaxi162Scf00347g01022 Petunia axillaris HOM05D006119 ORTHO05D007641 1.9e-38 162.5 101 70.3
Eucgr.C02591 Eucalyptus grandis HOM05D006119 ORTHO05D007641 2.5e-38 162.2 108 65.7
MELO3C029440.2 Cucumis melo HOM05D006119 ORTHO05D007641 3.3e-38 161.8 124 61.3
TWI63G1376 Tripterygium wilfordii HOM05D006119 ORTHO05D007641 7.2e-38 160.6 100 73.0
Lalb_Chr07g0179791 Lupinus albus HOM05D006119 ORTHO05D007641 9.5e-38 160.2 100 73.0
FvH4_1g01100 Fragaria vesca HOM05D006119 ORTHO05D007641 1.2e-37 159.8 117 62.4
MBI15_g26716_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 1.2e-37 159.8 113 64.6
TPR.G39188 Trifolium pratense HOM05D006119 ORTHO05D007641 1.2e-37 159.8 118 65.3
vmacro06086 Vaccinium macrocarpon HOM05D006119 ORTHO05D007641 1.2e-37 159.8 124 60.5
FAN26G3335 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.1e-37 159.1 117 62.4
FAN28G1026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 2.1e-37 159.1 117 62.4
Sopen07g001370 Solanum pennellii HOM05D006119 ORTHO05D007641 2.1e-37 159.1 112 60.7
FAN19G0026 Fragaria x ananassa HOM05D006119 ORTHO05D007641 3.6e-37 158.3 112 63.4
FAN23G1211 Fragaria x ananassa HOM05D006119 ORTHO05D007641 3.6e-37 158.3 117 61.5
Atru.chr7.85 Acer truncatum HOM05D006119 ORTHO05D007641 6.1e-37 157.5 106 67.9
Os08g0441400 Oryza sativa ssp. japonica HOM05D006119 ORTHO05D007641 6.1e-37 157.5 98 72.4
PSO111G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 6.1e-37 157.5 112 62.5
GSVIVG01023584001 Vitis vinifera HOM05D006119 ORTHO05D007641 6.1e-37 157.5 100 70.0
ATR0739G093 Amborella trichopoda HOM05D006119 ORTHO05D007641 1.4e-36 156.4 99 70.7
Solyc07g005410.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 3.0e-36 155.2 112 58.9
Zm00001eb041130 Zea mays HOM05D006119 ORTHO05D007641 5.2e-36 154.5 98 69.4
Nitab4.5_0004815g0030 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.2e-35 153.3 134 54.5
PSO561G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 1.2e-35 153.3 112 61.6
PGSC0003DMG400007897 Solanum tuberosum HOM05D006119 ORTHO05D007641 1.2e-35 153.3 100 68.0
Dinv42873 Davidia involucrata HOM05D006119 ORTHO05D007641 1.5e-35 152.9 100 70.0
Dinv43227 Davidia involucrata HOM05D006119 ORTHO05D007641 1.5e-35 152.9 100 70.0
Sopen12g005020 Solanum pennellii HOM05D006119 ORTHO05D007641 1.5e-35 152.9 100 68.0
CANSAT11G0807 Cannabis sativa HOM05D006119 ORTHO05D007641 2.0e-35 152.5 100 69.0
ECA234G1280 Erigeron canadensis HOM05D006119 ORTHO05D007641 2.0e-35 152.5 106 62.3
Duzib187G0693 Durio zibethinus HOM05D006119 ORTHO05D007641 2.6e-35 152.1 104 65.4
MSTRG.26287 Avicennia marina HOM05D006119 ORTHO05D007641 4.4e-35 151.4 100 70.0
Peaxi162Scf00062g00419 Petunia axillaris HOM05D006119 ORTHO05D007641 7.5e-35 150.6 100 67.0
Solyc12g010150.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 7.5e-35 150.6 99 67.7
Gohir.A05G052000 Gossypium hirsutum HOM05D006119 ORTHO05D007641 1.3e-34 149.8 100 67.0
Gohir.D05G053500 Gossypium hirsutum HOM05D006119 ORTHO05D007641 1.7e-34 149.4 100 67.0
MD15G1154500 Malus domestica HOM05D006119 ORTHO05D007641 1.7e-34 149.4 100 69.0
Actinidia04288 Actinidia chinensis HOM05D006119 ORTHO05D007641 2.2e-34 149.1 100 67.0
COL.COLO4_18789 Corchorus olitorius HOM05D006119 ORTHO05D007641 3.7e-34 148.3 106 61.3
Prupe.7G260900 Prunus persica HOM05D006119 ORTHO05D007641 6.3e-34 147.5 100 67.0
Actinidia38675 Actinidia chinensis HOM05D006119 ORTHO05D007641 8.3e-34 147.1 91 72.5
Nn8g39847 Nelumbo nucifera HOM05D006119 ORTHO05D007641 1.1e-33 146.7 100 67.0
Aqoxy7G03440 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 1.8e-33 146.0 109 63.3
Psat0ss6646g0160 Pisum sativum HOM05D006119 ORTHO05D007641 1.8e-33 146.0 102 67.6
Rhsim03G0256600 Rhododendron simsii HOM05D006119 ORTHO05D007641 2.4e-33 145.6 128 55.5
Cc06_g15170 Coffea canephora HOM05D006119 ORTHO05D007641 7.0e-33 144.1 100 64.0
Oeu021261.1 Olea europaea HOM05D006119 ORTHO05D007641 7.0e-33 144.1 99 64.6
Phvul.003G157000 Phaseolus vulgaris HOM05D006119 ORTHO05D007641 7.0e-33 144.1 96 66.7
Sp6g19680 Schrenkiella parvula HOM05D006119 ORTHO05D007641 7.0e-33 144.1 75 90.7
CsaV3_1G028790 Cucumis sativus L. HOM05D006119 ORTHO05D007641 1.6e-32 142.9 99 64.6
Nitab4.5_0006408g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 2.0e-32 142.5 89 68.5
SalBow1G1238 Salvia bowleyana HOM05D006119 ORTHO05D007641 2.7e-32 142.1 100 65.0
Rhsim01G0035400 Rhododendron simsii HOM05D006119 ORTHO05D007641 5.9e-32 141.0 98 66.3
MD02G1009100 Malus domestica HOM05D006119 ORTHO05D007641 1.3e-31 139.8 100 65.0
AUR62043251 Chenopodium quinoa HOM05D006119 ORTHO05D007641 1.7e-31 139.4 107 59.8
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 8.6e-31 137.1 65 96.9
Sc18g0007620 Simmondsia chinensis HOM05D006119 ORTHO05D007641 8.6e-31 137.1 100 64.0
unitig_899.g15448 Utricularia gibba HOM05D006119 ORTHO05D007641 1.5e-30 136.3 87 69.0
Sed0018834 Sechium edule HOM05D006119 ORTHO05D007641 5.6e-30 134.4 85 69.4
Glyma.17G075100 Glycine max HOM05D006119 ORTHO05D007641 7.3e-30 134.0 85 72.9
RcHm_v2.0_Chr2g0085901 Rosa chinensis HOM05D006119 ORTHO05D007641 7.3e-30 134.0 100 60.0
PGSC0003DMG400011173 Solanum tuberosum HOM05D006119 ORTHO05D007641 7.3e-30 134.0 86 66.3
CAN.G1116.12 Capsicum annuum HOM05D006119 ORTHO05D007641 1.2e-29 133.3 97 60.8
Nitab4.5_0002315g0130 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.2e-29 133.3 108 58.3
Nitab4.5_0001813g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 6.1e-29 131.0 103 55.3
Nitab4.5_0001478g0060 Nicotiana tabacum HOM05D006119 ORTHO05D007641 1.0e-28 130.2 109 57.8
EL10Ac8g18851 Beta vulgaris HOM05D006119 ORTHO05D007641 3.0e-28 128.6 92 59.8
Pp3c18_18500 Physcomitrium patens HOM05D006119 ORTHO05D007641 1.2e-27 126.7 106 56.6
DCAR_020878 Daucus carota HOM05D006119 ORTHO05D007641 9.8e-27 123.6 81 69.1
HanXRQChr10g0314681 Helianthus annuus HOM05D006119 ORTHO05D007641 2.4e-25 119.0 100 54.0
Nitab4.5_0013449g0010 Nicotiana tabacum HOM05D006119 ORTHO05D007641 3.2e-25 118.6 96 56.2
Pp3c21_10430 Physcomitrium patens HOM05D006119 ORTHO05D007641 1.0e-23 113.6 101 51.5
Mapoly0012s0137 Marchantia polymorpha HOM05D006119 ORTHO05D007641 1.1e-22 110.2 86 58.1
CAN.G551.35 Capsicum annuum HOM05D006119 ORTHO05D007641 1.6e-21 106.3 75 62.7
SMO137G0238 Selaginella moellendorffii HOM05D006119 ORTHO05D007641 1.6e-21 106.3 99 50.5
SEGI_38164 Sequoiadendron giganteum HOM05D006119 ORTHO05D007641 5.8e-19 97.8 64 67.2
Aqoxy4G01852 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 2.4e-17 92.4 69 58.0
AagrBONN_evm.TU.Sc2ySwM_228.1886 Anthoceros agrestis HOM05D006119 ORTHO05D007641 6.6e-15 84.3 64 56.2
CDE05G1090 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 4.3e-14 81.6 72 50.0
Nitab4.5_0003612g0050 Nicotiana tabacum HOM05D006119 ORTHO05D007641 5.2e-12 74.7 60 56.7
Pp3c22_3250 Physcomitrium patens HOM05D006119 ORTHO05D007641 7.1e-09 64.3 71 43.7
PSO339G5888 Papaver somniferum HOM05D006119 ORTHO05D007641 4.6e-08 61.6 108 36.1
Rhsim04G0128900 Rhododendron simsii HOM05D002149 ORTHO05D002154 1.7e-07 59.7 34 79.4
CiPaw.16G114400 Carya illinoinensis HOM05D006119 ORTHO05D007641 3.0e-07 58.9 67 50.7
MBI15_g07754_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 2.5e-06 55.8 51 54.9


User provided reference genes

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