Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 4.1e-154 548.1 301 100.0
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 7.6e-124 447.6 374 72.7
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 8.4e-123 444.1 373 72.7
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.5e-116 423.3 284 87.0
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 4.5e-116 421.8 374 70.6
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.3e-115 420.2 364 71.7
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 8.5e-115 417.5 284 84.2
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 5.5e-114 414.8 284 85.2
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.1e-113 411.4 284 80.3
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.8e-112 409.8 284 83.5
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 9.1e-109 397.5 285 78.9
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 4.5e-108 395.2 345 71.3
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.2e-107 392.9 345 71.0
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.4e-101 373.6 287 77.4
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 5.3e-101 371.7 287 75.6
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.0e-99 367.5 325 68.3
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 2.1e-97 359.8 309 66.7
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 8.0e-97 357.8 288 69.8
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.8e-96 356.7 286 69.6
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 6.7e-96 354.8 287 68.6
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 8.8e-96 354.4 287 69.3
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 8.8e-96 354.4 287 68.6
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 3.3e-95 352.4 286 68.5
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 4.4e-95 352.1 288 67.4
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 4.4e-95 352.1 286 72.7
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.7e-94 350.1 288 67.0
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.7e-94 350.1 286 73.1
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 2.8e-94 349.4 288 69.8
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 3.7e-94 349.0 286 68.5
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 1.1e-93 347.4 286 71.3
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 1.4e-93 347.1 284 68.3
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.8e-93 346.7 286 68.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 3.1e-93 345.9 286 72.7
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 4.1e-93 345.5 286 68.5
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 5.3e-93 345.1 286 71.7
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 7.0e-93 344.7 285 72.3
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 9.1e-93 344.4 310 65.8
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.0e-92 343.2 285 71.9
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 2.0e-92 343.2 286 70.6
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 2.0e-92 343.2 310 62.3
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 2.6e-92 342.8 286 67.5
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 2.6e-92 342.8 286 67.5
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 3.5e-92 342.4 286 71.0
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.0e-91 340.9 287 66.9
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.7e-91 340.1 286 67.5
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 5.0e-91 338.6 267 74.9
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 5.0e-91 338.6 286 66.8
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 5.0e-91 338.6 286 66.4
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 8.5e-91 337.8 288 69.1
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 3.2e-90 335.9 286 70.6
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 3.2e-90 335.9 286 66.1
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 4.2e-90 335.5 288 69.8
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 5.5e-90 335.1 303 62.4
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 7.2e-90 334.7 287 69.7
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 7.2e-90 334.7 286 67.5
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 9.4e-90 334.3 287 64.8
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 9.4e-90 334.3 285 65.3
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.2e-89 334.0 286 69.9
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.2e-89 334.0 287 67.2
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 2.1e-89 333.2 286 67.1
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 2.7e-89 332.8 307 65.8
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 3.6e-89 332.4 286 65.7
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 1.0e-88 330.9 288 66.3
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.8e-88 330.1 287 69.0
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 2.3e-88 329.7 286 65.4
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 4.0e-88 328.9 281 66.5
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.7e-88 328.2 267 72.7
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 3.3e-87 325.9 265 68.3
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 5.7e-87 325.1 295 63.1
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 7.5e-87 324.7 269 68.8
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 9.7e-87 324.3 288 64.6
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 9.7e-87 324.3 286 68.5
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.7e-86 323.6 286 68.2
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.7e-86 323.6 287 66.6
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.4e-85 320.5 265 67.5
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.8e-85 320.1 310 63.2
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 3.5e-84 315.8 288 65.6
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.0e-83 314.3 286 67.8
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 1.0e-83 314.3 311 59.5
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.2e-83 313.2 297 64.3
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 6.5e-83 311.6 284 61.6
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 5.5e-82 308.5 289 64.7
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.0e-80 304.3 288 64.2
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.0e-80 304.3 288 64.2
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 4.0e-80 302.4 310 60.6
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 6.8e-80 301.6 309 59.5
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 6.8e-80 301.6 315 59.4
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 6.8e-80 301.6 285 65.6
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.5e-79 300.4 288 60.4
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.6e-79 299.7 309 59.2
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.6e-79 299.7 286 59.1
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 4.4e-79 298.9 308 61.4
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.7e-79 298.5 281 62.3
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 5.7e-79 298.5 289 63.7
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.3e-78 297.4 266 66.9
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 3.7e-78 295.8 264 61.7
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 4.8e-78 295.4 263 68.4
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 6.3e-78 295.0 286 60.8
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.1e-77 294.3 287 63.8
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 1.4e-77 293.9 288 63.9
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 1.8e-77 293.5 280 62.9
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 2.4e-77 293.1 280 62.9
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 2.4e-77 293.1 280 62.9
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 4.1e-77 292.4 262 68.3
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 4.1e-77 292.4 286 64.0
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 4.1e-77 292.4 275 64.4
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 1.2e-76 290.8 266 64.7
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 3.5e-76 289.3 264 64.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 3.5e-76 289.3 264 64.0
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.7e-75 287.0 314 58.0
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 3.8e-75 285.8 288 62.5
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 6.6e-75 285.0 297 60.6
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.1e-74 284.3 304 61.5
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 1.1e-74 284.3 240 67.1
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 6.1e-73 278.5 284 58.1
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 6.1e-73 278.5 263 65.4
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.8e-72 276.9 294 62.9
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 5.7e-71 271.9 289 52.6
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.5e-71 271.6 283 63.3
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.8e-70 269.6 267 56.6
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 9.2e-69 264.6 266 55.6
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.7e-67 260.4 277 57.0
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.2e-65 254.2 263 55.9
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.2e-65 254.2 219 70.3
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 8.0e-65 251.5 268 61.2
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.4e-64 250.8 282 56.7
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.0e-64 249.6 289 48.1
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 2.9e-62 243.0 262 53.1
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 7.0e-61 238.4 288 47.6
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 2.7e-60 236.5 140 96.4
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.0e-60 235.3 267 50.2
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.9e-59 232.6 267 48.7
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.5e-58 230.7 243 63.0
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.4e-53 214.2 298 46.3
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 8.6e-51 204.9 193 63.2
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 8.9e-48 194.9 297 48.5
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 3.4e-47 193.0 191 60.7
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 8.6e-43 178.3 163 65.0
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 5.1e-35 152.5 139 64.0
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.6e-33 147.5 96 84.4
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 1.0e-27 128.3 79 74.7
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.3e-27 127.9 185 47.0
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.5e-26 124.4 70 80.0
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 9.6e-26 121.7 72 77.8
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.3e-19 100.5 115 44.3
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.9e-19 99.8 82 67.1
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 3.0e-11 73.6 78 47.4
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 6.9e-08 62.4 33 90.9
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 9.0e-08 62.0 93 46.2
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 3.4e-07 60.1 48 60.4
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 1.3e-06 58.2 40 72.5
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 1.3e-06 58.2 62 50.0


User provided reference genes

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