Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04460 Brassica carinata HOM05D001363 ORTHO05D006255 2.5e-98 362.1 182 100.0
A03p12830 Brassica napus HOM05D001363 ORTHO05D006255 2.2e-81 305.8 169 92.3
BraA03t10591Z Brassica rapa HOM05D001363 ORTHO05D006255 2.2e-81 305.8 169 92.3
BolC3t13941H Brassica oleracea HOM05D001363 ORTHO05D006255 3.7e-81 305.1 169 92.3
BcaC01g06488 Brassica carinata HOM05D001363 ORTHO05D006255 7.7e-79 297.4 169 89.3
C03p14990 Brassica napus HOM05D001363 ORTHO05D006255 7.7e-79 297.4 169 90.5
CARHR271240 Cardamine hirsuta HOM05D001363 ORTHO05D006255 1.0e-70 270.4 169 81.7
Thhalv10015458m.g Eutrema salsugineum HOM05D001363 ORTHO05D006255 1.1e-69 266.9 173 80.9
Sp6g19160 Schrenkiella parvula HOM05D001363 ORTHO05D006255 1.9e-69 266.2 169 82.2
AT5G57450 Arabidopsis thaliana HOM05D001363 ORTHO05D006255 5.2e-67 258.1 169 79.3
Carub.0008s1796 Capsella rubella HOM05D001363 ORTHO05D006255 3.4e-66 255.4 156 84.6
BcaC01g06495 Brassica carinata HOM05D001363 ORTHO05D006255 3.7e-65 251.9 128 100.0
Aa31LG3G13330 Aethionema arabicum HOM05D001363 ORTHO05D006255 2.0e-63 246.1 169 75.7
Atru.chr7.643 Acer truncatum HOM05D001363 ORTHO05D006255 1.3e-54 216.9 169 62.1
PGR142G0790 Punica granatum HOM05D001363 ORTHO05D006255 1.7e-54 216.5 169 64.5
Rhsim03G0264200 Rhododendron simsii HOM05D001363 ORTHO05D006255 3.9e-54 215.3 158 65.2
FvH4_4g08251 Fragaria vesca HOM05D001363 ORTHO05D006255 8.6e-54 214.2 171 61.4
MD06G1167000 Malus domestica HOM05D001363 ORTHO05D006255 2.5e-53 212.6 169 60.4
QL02p097661 Quercus lobata HOM05D001363 ORTHO05D006255 2.5e-53 212.6 171 61.4
Manes.01G004820 Manihot esculenta HOM05D001363 ORTHO05D006255 4.3e-53 211.8 169 63.9
Cfa013508 Carpinus fangiana HOM05D001363 ORTHO05D006255 7.3e-53 211.1 169 62.7
CSS0019343 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 9.5e-53 210.7 169 62.7
CSS0044369 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 9.5e-53 210.7 169 62.7
CANSAT11G0841 Cannabis sativa HOM05D001363 ORTHO05D006255 9.5e-53 210.7 169 63.9
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 9.5e-53 210.7 170 62.4
Thecc.09G173000 Theobroma cacao HOM05D001363 ORTHO05D006255 2.1e-52 209.5 171 62.0
Haze_22100 Corylus avellana HOM05D001363 ORTHO05D006255 2.8e-52 209.1 169 62.1
EL10Ac4g08144 Beta vulgaris HOM05D001363 ORTHO05D006255 4.7e-52 208.4 177 60.5
MD14G1172600 Malus domestica HOM05D001363 ORTHO05D006255 6.2e-52 208.0 169 59.8
AUR62034263 Chenopodium quinoa HOM05D001363 ORTHO05D006255 8.0e-52 207.6 170 62.4
ClCG11G012170 Citrullus lanatus HOM05D001363 ORTHO05D006255 8.0e-52 207.6 176 59.7
Gohir.D05G005500 Gossypium hirsutum HOM05D001363 ORTHO05D006255 8.0e-52 207.6 177 58.2
MELO3C004027.2 Cucumis melo HOM05D001363 ORTHO05D006255 1.0e-51 207.2 172 62.8
RcHm_v2.0_Chr4g0402491 Rosa chinensis HOM05D001363 ORTHO05D006255 1.0e-51 207.2 169 60.4
vmacro06016 Vaccinium macrocarpon HOM05D001363 ORTHO05D006255 1.4e-51 206.8 158 62.7
TAR625G1447 Trochodendron aralioides HOM05D001363 ORTHO05D006255 1.8e-51 206.5 174 58.0
CsaV3_2G008370 Cucumis sativus L. HOM05D001363 ORTHO05D006255 2.3e-51 206.1 177 60.5
Ciclev10008928m.g Citrus clementina HOM05D001363 ORTHO05D006255 4.0e-51 205.3 174 60.3
Lj9P685T22 Lonicera japonica HOM05D001363 ORTHO05D006255 5.2e-51 204.9 168 61.3
CiPaw.08G036500 Carya illinoinensis HOM05D001363 ORTHO05D006255 1.2e-50 203.8 169 60.9
Actinidia38636 Actinidia chinensis HOM05D001363 ORTHO05D006255 1.5e-50 203.4 151 65.6
TWI34G1409 Tripterygium wilfordii HOM05D001363 ORTHO05D006255 1.5e-50 203.4 172 59.3
Gohir.A05G004600 Gossypium hirsutum HOM05D001363 ORTHO05D006255 4.4e-50 201.8 171 58.5
arahy.Tifrunner.gnm1.ann1.2PT66T Arachis hypogaea HOM05D001363 ORTHO05D006255 5.8e-50 201.4 169 62.1
Gorai.009G005300 Gossypium raimondii HOM05D001363 ORTHO05D006255 5.8e-50 201.4 171 58.5
Nn2g12720 Nelumbo nucifera HOM05D001363 ORTHO05D006255 7.5e-50 201.1 176 57.4
Cpa.g.sc95.51 Carica papaya HOM05D001363 ORTHO05D006255 9.8e-50 200.7 169 59.8
Eucgr.C00157 Eucalyptus grandis HOM05D001363 ORTHO05D006255 9.8e-50 200.7 169 58.6
Potri.018G093100 Populus trichocarpa HOM05D001363 ORTHO05D006255 1.7e-49 199.9 173 59.0
arahy.Tifrunner.gnm1.ann1.YA5C6P Arachis hypogaea HOM05D001363 ORTHO05D006255 2.2e-49 199.5 169 61.5
Dinv41718 Davidia involucrata HOM05D001694 ORTHO05D000248 1.4e-48 196.8 162 59.3
GSVIVG01029206001 Vitis vinifera HOM05D001363 ORTHO05D006255 4.1e-48 195.3 169 58.0
FAN07G0609 Fragaria x ananassa HOM05D001363 ORTHO05D006255 9.2e-48 194.1 160 59.4
Sc08g0005330 Simmondsia chinensis HOM05D001363 ORTHO05D006255 9.2e-48 194.1 155 62.6
Aqoxy2G00910 Aquilegia oxysepala HOM05D001363 ORTHO05D006255 1.6e-47 193.4 169 55.6
THA.LOC104813524 Tarenaya hassleriana HOM05D001363 ORTHO05D006255 2.0e-47 193.0 141 70.2
Sed0007175 Sechium edule HOM05D001363 ORTHO05D006255 4.6e-47 191.8 173 58.4
MBI14_g17365_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D006255 5.6e-45 184.9 161 58.4
Cc06_g13270 Coffea canephora HOM05D001363 ORTHO05D006255 7.3e-45 184.5 158 61.4
ECA236G4924 Erigeron canadensis HOM05D001363 ORTHO05D006255 1.6e-44 183.3 163 57.7
Lsat_1_v5_gn_8_66820 Lactuca sativa HOM05D001363 ORTHO05D006255 1.6e-44 183.3 161 57.1
HanXRQChr05g0143031 Helianthus annuus HOM05D001363 ORTHO05D006255 2.8e-44 182.6 168 57.1
BcaC01g06492 Brassica carinata HOM05D001363 ORTHO05D006255 1.4e-43 180.3 152 70.4
DCAR_014703 Daucus carota HOM05D001363 ORTHO05D006255 1.8e-43 179.9 172 52.3
Ca_12655_v3 Cicer arietinum L. HOM05D001363 ORTHO05D006255 3.4e-42 175.6 171 56.1
Lj6g0018832 Lotus japonicus HOM05D001363 ORTHO05D006255 3.4e-42 175.6 168 56.0
Oeu056514.1 Olea europaea HOM05D001363 ORTHO05D006255 5.8e-42 174.9 169 56.8
Psat1g024320 Pisum sativum HOM05D001363 ORTHO05D006255 6.4e-41 171.4 170 55.9
Medtr2g445230 Medicago truncatula HOM05D001363 ORTHO05D006255 8.3e-41 171.0 179 54.2
VMungo1383G3248 Vigna mungo HOM05D001363 ORTHO05D006255 8.3e-41 171.0 177 52.5
SHI41748 Sapria himalayana HOM05D001363 ORTHO05D006255 1.1e-40 170.6 127 65.4
Hund26352 Selenicereus undatus HOM05D001363 ORTHO05D006255 1.4e-40 170.2 132 65.2
PGSC0003DMG400020439 Solanum tuberosum HOM05D001363 ORTHO05D006255 1.9e-40 169.9 160 53.8
ATR0580G043 Amborella trichopoda HOM05D001363 ORTHO05D006255 2.4e-40 169.5 179 49.7
Phvul.008G013800 Phaseolus vulgaris HOM05D001363 ORTHO05D006255 5.4e-40 168.3 178 51.1
Sabra18G0080300 Salix brachista HOM05D001363 ORTHO05D006255 9.2e-40 167.5 119 64.7
Glyma.18G288200 Glycine max HOM05D001363 ORTHO05D006255 3.9e-38 162.2 170 53.5
Migut.J01476 Erythranthe guttata HOM05D001363 ORTHO05D006255 5.1e-38 161.8 169 51.5
Solyc07g055170.1 Solanum lycopersicum HOM05D001363 ORTHO05D006255 8.6e-38 161.0 152 53.9
MSTRG.19704 Avicennia marina HOM05D001363 ORTHO05D006255 1.5e-37 160.2 171 53.2
CAN.G1081.7 Capsicum annuum HOM05D001363 ORTHO05D006255 1.6e-36 156.8 153 52.9
SEGI_22217 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.6e-36 156.8 172 47.1
SGA_v2.0_scaffold66G22453 Striga asiatica HOM05D001363 ORTHO05D006255 2.1e-36 156.4 169 50.9
TPR.G9532 Trifolium pratense HOM05D001363 ORTHO05D006255 3.6e-36 155.6 170 51.2
CBR_g28512 Chara braunii HOM05D001363 ORTHO05D006255 5.2e-35 151.8 165 47.3
Sopen07g027050 Solanum pennellii HOM05D000134 ORTHO05D003318 3.8e-33 145.6 143 52.4
Zm00001eb243950 Zea mays HOM05D001363 ORTHO05D006255 3.8e-33 145.6 159 48.4
unitig_0.g574 Utricularia gibba HOM05D001363 ORTHO05D006255 1.9e-32 143.3 169 45.0
HPP92_010750 Vanilla planifolia HOM05D001363 ORTHO05D006255 2.4e-32 142.9 161 47.2
PSO339G0974 Papaver somniferum HOM05D000001 ORTHO05D006255 5.4e-32 141.7 137 55.5
Peaxi162Scf00276g00065 Petunia axillaris HOM05D001363 ORTHO05D006255 9.2e-32 141.0 131 57.3
Mapoly0009s0225 Marchantia polymorpha HOM05D001363 ORTHO05D006255 1.6e-31 140.2 160 46.9
Os02g0562100 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D006255 2.1e-31 139.8 154 46.1
SalBow6G0285 Salvia bowleyana HOM05D001363 ORTHO05D006255 2.1e-31 139.8 143 53.1
SalBow7G1126 Salvia bowleyana HOM05D001363 ORTHO05D006255 2.7e-31 139.4 168 48.8
Lalb_Chr11g0072311 Lupinus albus HOM05D001363 ORTHO05D006255 4.6e-31 138.7 127 57.5
Peaxi162Scf00113g00112 Petunia axillaris HOM05D001363 ORTHO05D006255 4.6e-31 138.7 126 57.9
Oeu002544.1 Olea europaea HOM05D001363 ORTHO05D006255 2.3e-30 136.3 134 58.2
PSO801G0379 Papaver somniferum HOM05D001363 ORTHO05D006255 3.0e-30 136.0 133 55.6
SalBow3G2957 Salvia bowleyana HOM05D001363 ORTHO05D006255 6.9e-27 124.8 160 42.5
Prupe.1G061700 Prunus persica HOM05D001363 ORTHO05D006255 1.5e-26 123.6 98 59.2
SalBow3G3288 Salvia bowleyana HOM05D001363 ORTHO05D006255 3.8e-25 119.0 160 41.2
SalBow1G6812 Salvia bowleyana HOM05D001363 ORTHO05D006255 9.3e-24 114.4 157 45.2
PRCOL_00002213 Prasinoderma coloniale HOM05D001363 ORTHO05D006255 8.7e-22 107.8 168 39.3
SalBow3G2802 Salvia bowleyana HOM05D001363 ORTHO05D006255 1.9e-21 106.7 160 38.8
Cre06.g278151 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D006255 4.0e-19 99.0 182 35.2
EL10Ac8g19301 Beta vulgaris HOM05D001363 ORTHO05D006255 1.2e-18 97.4 156 35.9
EL10Ac4g08159 Beta vulgaris HOM05D001363 ORTHO05D006255 1.5e-18 97.1 162 36.4
EL10Ac2g02973 Beta vulgaris HOM05D008320 ORTHO05D012961 4.9e-17 92.0 109 42.2
MCO13G404 Micromonas commoda HOM05D001363 ORTHO05D006255 8.4e-17 91.3 155 38.7
EL10As3g23308 Beta vulgaris HOM05D001363 ORTHO05D006255 1.9e-16 90.1 158 32.3
EL10Ac9g22685 Beta vulgaris HOM05D014025 ORTHO05D006255 7.1e-16 88.2 153 36.6
EL10Ac4g09496 Beta vulgaris HOM05D001363 ORTHO05D006255 1.2e-15 87.4 153 32.0
EL10Ac1g01763 Beta vulgaris HOM05D001363 ORTHO05D006255 3.5e-15 85.9 159 33.3
EL10Ac7g15946 Beta vulgaris HOM05D014025 ORTHO05D006255 3.5e-15 85.9 153 35.9
EL10Ac1g01702 Beta vulgaris HOM05D001363 ORTHO05D006255 6.7e-14 81.6 153 30.7
EL10Ac7g18135 Beta vulgaris HOM05D014025 ORTHO05D006255 8.7e-14 81.3 153 35.3
RcHm_v2.0_Chr4g0402521 Rosa chinensis HOM05D001363 ORTHO05D006255 1.1e-11 74.3 52 67.3
SMO270G0051 Selaginella moellendorffii HOM05D027465 ORTHO05D006255 1.1e-11 74.3 104 41.3
EL10Ac4g08201 Beta vulgaris HOM05D001363 ORTHO05D006255 1.8e-11 73.6 173 28.3
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 4.0e-11 72.4 70 51.4
EL10Ac3g06723 Beta vulgaris HOM05D001363 ORTHO05D006255 5.3e-11 72.0 153 28.8
EL10Ac9g22649 Beta vulgaris HOM05D001363 ORTHO05D006255 2.0e-10 70.1 117 32.5
EL10Ac3g06329 Beta vulgaris HOM05D001363 ORTHO05D006255 3.4e-10 69.3 99 40.4
EL10Ac4g08765 Beta vulgaris HOM05D014025 ORTHO05D006255 9.9e-10 67.8 108 32.4
EL10Ac3g06993 Beta vulgaris HOM05D014025 ORTHO05D006255 3.8e-09 65.9 117 35.9
EL10Ac1g01411 Beta vulgaris HOM05D001363 ORTHO05D006255 8.4e-09 64.7 101 32.7
EL10Ac5g12481 Beta vulgaris HOM05D014025 ORTHO05D006255 1.1e-08 64.3 93 40.9
AUR62036755 Chenopodium quinoa HOM05D009432 ORTHO05D011319 1.1e-08 64.3 124 29.8
MCO10G289 Micromonas commoda HOM05D007288 ORTHO05D009200 2.1e-07 60.1 183 26.8
unitig_0.g1301 Utricularia gibba HOM05D001546 ORTHO05D008648 2.1e-07 60.1 170 28.2
SalBow5G5288 Salvia bowleyana HOM05D001546 ORTHO05D008648 7.9e-07 58.2 168 29.2
PRCOL_00003537 Prasinoderma coloniale HOM05D001546 ORTHO05D008648 2.3e-06 56.6 153 28.1
Thhalv10001556m.g Eutrema salsugineum HOM05D001546 ORTHO05D008648 3.0e-06 56.2 154 28.6
BcaC02g12229 Brassica carinata HOM05D001546 ORTHO05D008648 3.9e-06 55.8 167 26.9
A05p05300 Brassica napus HOM05D001546 ORTHO05D008648 3.9e-06 55.8 167 26.9
C04p06210 Brassica napus HOM05D001546 ORTHO05D008648 3.9e-06 55.8 167 26.9
BraA05t19499Z Brassica rapa HOM05D001546 ORTHO05D008648 3.9e-06 55.8 167 26.9
Sp4g27300 Schrenkiella parvula HOM05D001546 ORTHO05D008648 3.9e-06 55.8 167 27.5
SpUn0031_0020 Schrenkiella parvula HOM05D001546 ORTHO05D008648 3.9e-06 55.8 167 27.5
DCAR_011907 Daucus carota HOM05D001363 ORTHO05D002212 5.1e-06 55.5 158 28.5
ATR0757G033 Amborella trichopoda HOM05D001546 ORTHO05D008648 6.7e-06 55.1 166 27.7
AT2G45280 Arabidopsis thaliana HOM05D001546 ORTHO05D008648 8.7e-06 54.7 166 27.1


User provided reference genes

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