Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 3.0e-86 322.0 188 100.0
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.7e-65 253.1 171 83.0
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.7e-65 253.1 171 83.0
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 8.6e-65 250.8 171 88.9
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 8.6e-65 250.8 200 77.5
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 4.0e-62 241.9 193 71.5
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 4.0e-62 241.9 193 71.5
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 6.8e-62 241.1 171 87.1
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 6.8e-62 241.1 171 87.1
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 9.8e-61 237.3 171 86.5
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-59 233.4 194 72.7
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 2.4e-59 232.6 196 71.9
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 3.1e-59 232.3 170 73.5
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.2e-58 230.3 192 69.3
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.7e-58 229.2 205 69.8
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 5.9e-58 228.0 191 73.8
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 5.9e-58 228.0 183 71.0
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 2.9e-57 225.7 182 80.8
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.1e-56 223.8 191 71.2
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 6.1e-55 218.0 186 67.7
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 3.7e-52 208.8 187 67.4
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 1.4e-51 206.8 199 70.9
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 8.6e-49 197.6 207 65.7
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 5.8e-45 184.9 192 67.2
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 2.2e-44 183.0 192 69.3
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.5e-37 157.9 212 49.1
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.8e-20 102.4 185 43.2
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 8.4e-20 101.3 211 40.8
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.4e-19 99.8 213 39.9
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.1e-18 96.7 195 44.6
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.7e-17 93.6 160 45.0
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 2.1e-15 86.7 171 37.4
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 2.1e-15 86.7 171 37.4
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.2e-13 80.9 208 31.2
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.2e-13 80.9 158 39.9
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 9.9e-13 77.8 101 42.6
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.7e-12 77.0 218 29.4
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-12 76.6 204 30.9
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.9e-12 75.5 167 38.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.4e-12 75.1 163 41.7
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.4e-12 74.7 142 36.6
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 1.1e-11 74.3 153 35.9
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.4e-11 73.2 204 30.9
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 2.4e-11 73.2 248 29.8
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.2e-11 72.8 204 30.9
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.2e-11 72.8 181 38.1
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.6e-10 70.5 159 39.0
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 2.1e-10 70.1 152 37.5
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.7e-10 69.7 213 32.9
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 3.5e-10 69.3 225 28.9
Aa31LG3G12880 Aethionema arabicum HOM05D003238 ORTHO05D003571 4.6e-10 68.9 61 59.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.6e-10 68.9 143 34.3
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 4.6e-10 68.9 179 33.5
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 4.6e-10 68.9 164 37.2
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 6.0e-10 68.6 145 43.4
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 7.9e-10 68.2 219 26.9
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.8e-09 67.0 147 34.7
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 3.0e-09 66.2 126 34.1
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 3.9e-09 65.9 129 36.4
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 8.7e-09 64.7 160 31.2
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.1e-08 64.3 230 31.7
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.5e-08 63.9 150 31.3
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 2.5e-08 63.2 143 34.3
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 2.5e-08 63.2 232 26.3
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.3e-08 62.4 65 44.6
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 5.6e-08 62.0 152 36.2
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 5.6e-08 62.0 188 30.9
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 9.6e-08 61.2 127 41.7
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 9.6e-08 61.2 64 46.9
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.3e-07 60.8 67 50.7
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 2.1e-07 60.1 152 36.2
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.8e-07 59.7 179 28.5
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 3.7e-07 59.3 63 65.1
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 3.7e-07 59.3 127 42.5
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 4.8e-07 58.9 159 37.1
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 4.8e-07 58.9 116 36.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.8e-07 58.9 116 36.2
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.8e-07 58.9 117 43.6
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 6.2e-07 58.5 118 42.4
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 8.1e-07 58.2 57 54.4
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 8.1e-07 58.2 130 42.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 8.1e-07 58.2 141 38.3
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.1e-06 57.8 119 42.0
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.1e-06 57.8 163 30.1
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.1e-06 57.8 125 44.0
Sc18g0002230 Simmondsia chinensis HOM05D003238 ORTHO05D003571 1.1e-06 57.8 102 34.3
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 1.1e-06 57.8 122 37.7
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.4e-06 57.4 143 34.3
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.8e-06 57.0 127 31.5
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.8e-06 57.0 117 42.7
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.8e-06 57.0 117 42.7
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 1.8e-06 57.0 154 30.5
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.0e-06 55.8 126 39.7
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 4.0e-06 55.8 223 32.3
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 4.0e-06 55.8 140 47.1
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 5.3e-06 55.5 117 41.9
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 5.3e-06 55.5 156 32.1
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 5.3e-06 55.5 128 41.4
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 5.3e-06 55.5 51 52.9
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 5.3e-06 55.5 140 32.1
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 6.9e-06 55.1 56 46.4
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 9.0e-06 54.7 220 30.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 9.0e-06 54.7 97 40.2


User provided reference genes

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