Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1480.7 764 100.0
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1162.1 773 82.5
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1156.7 772 82.4
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1148.3 773 81.9
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1145.2 777 81.3
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 0.0e+00 1122.5 777 80.3
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.2e-275 951.8 831 67.3
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 7.3e-272 940.6 833 67.2
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 7.1e-251 870.9 836 63.9
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 1.3e-244 850.1 830 65.1
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 1.3e-236 823.5 829 63.3
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.0e-233 812.4 834 63.4
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.8e-214 750.0 802 60.6
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 2.2e-212 743.0 761 61.2
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 6.1e-194 681.8 764 57.1
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 7.5e-192 674.9 786 55.7
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 1.7e-191 673.7 770 56.6
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 5.5e-187 658.7 764 56.7
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 2.8e-162 576.6 710 54.1
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 2.7e-157 560.1 709 53.2
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-135 487.3 713 50.2
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.7e-103 381.3 971 37.1
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.9e-103 380.6 980 37.9
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 9.4e-102 375.6 936 38.5
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 3.0e-100 370.5 943 37.1
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.8e-97 361.3 946 37.6
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 5.3e-97 359.8 1007 35.7
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.1e-89 334.0 844 38.5
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 5.0e-87 326.6 975 35.5
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 3.6e-85 320.5 944 34.9
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 3.6e-85 320.5 944 34.9
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 6.7e-84 316.2 882 36.2
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 3.3e-83 313.9 900 35.2
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 1.7e-82 311.6 903 35.5
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 2.8e-82 310.8 935 34.9
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 6.3e-82 309.7 905 35.5
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 8.2e-82 309.3 944 34.9
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.8e-81 308.1 914 35.0
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 2.6e-80 304.3 1003 33.3
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 6.5e-79 299.7 764 37.3
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.8e-76 291.6 954 34.0
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 2.3e-76 291.2 954 34.0
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 2.3e-76 291.2 935 33.8
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 4.4e-75 287.0 971 33.4
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 9.7e-75 285.8 968 32.9
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-73 282.3 954 33.2
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.2e-66 258.1 826 34.3
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.3e-60 238.0 195 66.2
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 1.6e-53 215.3 189 68.3
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 8.6e-47 193.0 342 39.8
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.8e-44 185.3 344 39.5
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 2.3e-44 184.9 885 28.1
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 6.8e-44 183.3 409 36.9
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 8.9e-44 183.0 380 38.2
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 1.3e-42 179.1 392 36.2
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.3e-42 179.1 340 38.2
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.2e-42 178.3 347 39.5
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.2e-42 178.3 346 39.3
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.9e-42 177.9 849 28.3
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 2.9e-42 177.9 347 39.5
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 6.4e-42 176.8 405 36.8
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 8.3e-42 176.4 448 33.7
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 1.1e-41 176.0 394 34.5
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.4e-41 175.6 453 33.3
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.9e-41 175.3 316 39.2
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.9e-41 175.3 316 39.2
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 7.1e-41 173.3 378 35.4
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 7.1e-41 173.3 378 36.5
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 9.2e-41 172.9 423 34.5
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 9.2e-41 172.9 741 30.2
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.2e-40 172.6 344 36.6
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.2e-40 172.6 435 33.3
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.1e-40 171.8 420 34.5
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 4.6e-40 170.6 375 36.8
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 4.6e-40 170.6 479 33.2
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.8e-40 169.9 363 37.5
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.3e-39 169.1 366 36.1
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.3e-39 169.1 366 36.1
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 1.7e-39 168.7 336 38.1
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.0e-39 167.9 366 36.1
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.9e-39 167.5 465 33.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 6.6e-39 166.8 437 34.3
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 8.6e-39 166.4 372 36.3
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.5e-38 165.6 470 33.0
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.5e-38 165.6 626 29.6
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.5e-38 165.6 465 33.3
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 1.5e-38 165.6 383 36.6
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 2.5e-38 164.9 382 35.9
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.5e-38 164.9 996 26.9
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 3.3e-38 164.5 462 32.7
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.3e-38 164.5 462 32.7
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.6e-38 163.7 411 35.0
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 7.3e-38 163.3 373 36.2
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 9.5e-38 162.9 447 33.1
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 9.5e-38 162.9 380 35.8
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.6e-37 162.2 384 36.2
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 2.8e-37 161.4 374 35.6
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 4.7e-37 160.6 325 36.9
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 4.7e-37 160.6 360 36.4
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 4.7e-37 160.6 382 35.1
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 8.1e-37 159.8 883 26.8
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.1e-36 159.5 478 32.2
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.1e-36 159.5 337 35.9
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.8e-36 158.7 452 32.3
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.1e-36 157.9 338 37.6
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.5e-35 155.6 314 38.5
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.5e-35 155.6 336 35.4
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.0e-35 155.2 539 30.6
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.6e-35 154.8 492 32.9
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 4.4e-35 154.1 333 35.4
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 4.4e-35 154.1 508 30.7
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 2.9e-34 151.4 345 36.2
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 4.9e-34 150.6 373 34.3
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 4.9e-34 150.6 387 33.3
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 4.9e-34 150.6 560 30.9
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 6.4e-34 150.2 388 33.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 6.4e-34 150.2 344 36.0
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 8.3e-34 149.8 345 35.4
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.4e-33 149.1 335 37.0
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 1.4e-33 149.1 410 33.9
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 2.4e-33 148.3 350 35.7
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 5.4e-33 147.1 478 31.2
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 7.1e-33 146.7 434 31.3
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.6e-32 145.6 897 25.2
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.1e-32 145.2 343 34.1
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 2.7e-32 144.8 397 32.7
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.5e-32 144.4 665 27.4
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.7e-31 142.1 733 28.2
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 2.3e-31 141.7 520 29.4
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.3e-31 141.7 415 31.1
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 3.9e-31 141.0 348 34.8
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 6.6e-31 140.2 452 30.1
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 6.6e-31 140.2 386 31.1
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.1e-30 139.4 453 30.2
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 1.9e-30 138.7 823 25.4
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 2.5e-30 138.3 431 31.6
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 2.5e-30 138.3 352 35.2
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.5e-30 138.3 462 30.1
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 4.3e-30 137.5 917 26.1
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 5.6e-30 137.1 902 25.2
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 5.6e-30 137.1 469 30.1
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 7.3e-30 136.7 766 26.4
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 9.6e-30 136.3 326 34.0
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.2e-29 136.0 329 34.3
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.1e-29 135.2 399 32.8
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.6e-29 134.4 924 25.9
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 8.1e-29 133.3 416 33.7
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.4e-28 131.7 294 38.8
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 6.8e-28 130.2 315 34.0
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.8e-27 127.1 462 29.9
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 9.9e-27 126.3 781 25.9
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 2.2e-26 125.2 329 35.6
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.9e-26 124.8 157 49.0
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 6.4e-26 123.6 453 30.0
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 5.4e-25 120.6 526 28.9
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 7.1e-25 120.2 320 32.2
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 2.1e-24 118.6 748 27.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 1.7e-23 115.5 398 32.2
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 7.3e-22 110.2 163 45.4
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 9.6e-22 109.8 504 26.4
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 6.0e-16 90.5 245 30.6
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 4.0e-12 77.8 315 29.8
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.9e-10 71.6 96 44.8
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 6.4e-10 70.5 77 49.4
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 8.4e-10 70.1 294 28.6
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 5.4e-09 67.4 233 27.5
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 9.3e-09 66.6 244 28.3
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.1e-08 65.5 117 40.2
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 3.5e-08 64.7 230 25.7
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 1.9e-06 58.9 89 41.6
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 2.5e-06 58.5 287 26.5
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 7.4e-06 57.0 257 30.0
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 9.6e-06 56.6 249 27.3
Mapoly0011s0209 Marchantia polymorpha HOM05D003788 ORTHO05D253274 9.6e-06 56.6 274 22.6


User provided reference genes

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