Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1611.7 901 100.0
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1135.6 938 72.8
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1113.2 948 71.2
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1089.3 948 70.3
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 1.8e-311 1072.4 1002 69.5
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 9.2e-311 1070.1 1021 68.2
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 6.0e-265 917.9 1009 61.4
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.2e-262 910.2 1009 59.1
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 4.6e-257 891.7 976 62.1
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 4.6e-257 891.7 1014 58.4
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 2.5e-255 885.9 1035 60.2
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 8.1e-254 880.9 980 64.5
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 8.1e-254 880.9 980 64.5
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-253 879.8 983 61.2
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 8.9e-253 877.5 995 61.5
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 3.4e-252 875.5 995 61.4
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-247 860.5 981 60.6
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 2.8e-246 855.9 1013 58.6
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 7.3e-239 831.2 1008 55.9
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 2.1e-233 813.1 991 61.2
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.8e-229 800.0 989 60.3
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 2.5e-218 763.1 852 61.5
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.6e-212 743.0 953 56.9
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 6.1e-201 705.3 807 63.8
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 1.9e-154 550.8 1040 45.3
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.8e-121 439.9 1038 39.9
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 8.4e-102 375.9 964 36.9
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 1.3e-99 368.6 962 37.2
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.3e-99 367.9 955 39.0
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 6.3e-97 359.8 970 36.6
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.6e-95 354.4 934 37.3
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 4.2e-93 347.1 933 35.9
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 3.4e-87 327.4 882 36.2
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-86 325.9 930 35.8
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 5.0e-86 323.6 927 35.8
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 8.5e-86 322.8 878 35.9
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-85 322.4 923 35.6
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 5.5e-85 320.1 893 35.8
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-84 318.9 930 35.8
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 6.1e-84 316.6 885 35.7
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 2.3e-83 314.7 905 35.5
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-82 312.4 885 35.5
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 1.1e-82 312.4 877 35.6
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 2.9e-62 244.6 724 34.5
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 2.4e-48 198.4 982 28.4
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 7.3e-45 186.8 1161 26.7
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 2.1e-44 185.3 1170 26.2
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.2e-43 180.6 1050 26.1
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 5.2e-43 180.6 1050 26.1
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 2.0e-42 178.7 1222 25.0
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 3.4e-42 177.9 1189 26.2
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.5e-42 176.8 1189 25.7
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.3e-41 176.0 1090 25.7
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.7e-41 175.6 1152 26.7
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 6.4e-41 173.7 1152 26.5
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 4.1e-40 171.0 1030 26.4
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.6e-39 169.1 626 32.1
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 2.7e-39 168.3 626 31.9
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 6.0e-39 167.2 1201 25.6
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 6.0e-39 167.2 1200 25.8
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 6.0e-39 167.2 1090 27.0
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.3e-38 166.0 1195 24.9
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.0e-38 164.1 1198 25.6
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 5.0e-38 164.1 457 33.0
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.1e-37 162.9 1193 25.4
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 3.3e-37 161.4 1189 25.0
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.3e-37 161.4 1196 25.4
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.6e-36 159.1 1206 24.5
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 2.8e-36 158.3 542 29.3
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 4.7e-36 157.5 1241 24.2
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 6.2e-36 157.1 1167 24.5
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 6.2e-36 157.1 1200 24.8
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 8.1e-36 156.8 1236 24.4
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 1.8e-35 155.6 1137 24.8
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 1.8e-35 155.6 1226 25.3
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 3.1e-35 154.8 433 34.2
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 6.8e-35 153.7 1168 24.3
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.0e-34 152.1 450 34.2
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.4e-34 151.4 407 33.9
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.4e-34 151.4 407 33.9
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 3.4e-34 151.4 1186 24.5
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 5.8e-34 150.6 407 33.9
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 7.5e-34 150.2 559 30.6
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-33 148.7 661 31.3
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.2e-33 148.7 465 33.5
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.7e-33 147.9 1128 24.6
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 4.9e-33 147.5 414 33.1
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 8.3e-33 146.7 738 26.6
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 1.4e-32 146.0 415 34.2
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 1.9e-32 145.6 1248 24.5
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 3.2e-32 144.8 630 28.7
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 3.2e-32 144.8 1041 25.9
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 4.1e-32 144.4 1198 25.0
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 5.4e-32 144.1 409 33.0
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 5.4e-32 144.1 1079 24.7
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 9.2e-32 143.3 412 32.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 9.2e-32 143.3 411 32.8
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 1.2e-31 142.9 414 33.6
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.2e-31 142.9 1152 25.0
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.1e-31 142.1 1216 24.5
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 1.3e-30 139.4 909 25.4
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 3.0e-30 138.3 366 35.0
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 3.9e-30 137.9 337 33.2
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 5.1e-30 137.5 1083 25.7
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 8.6e-30 136.7 366 34.7
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 8.6e-30 136.7 366 32.0
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 8.6e-30 136.7 1192 23.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 8.6e-30 136.7 386 33.7
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 1.1e-29 136.3 360 33.3
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.1e-29 136.3 611 28.6
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 1.9e-29 135.6 415 33.0
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 1.9e-29 135.6 395 33.2
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 3.3e-29 134.8 425 32.0
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 7.3e-29 133.7 333 35.1
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 7.3e-29 133.7 397 32.5
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.2e-28 132.9 399 30.3
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 1.2e-28 132.9 346 33.5
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 6.2e-28 130.6 920 25.7
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.1e-27 129.8 1113 24.3
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.1e-27 129.8 355 32.4
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 1.4e-27 129.4 1224 24.1
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.3e-27 128.6 827 26.8
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 5.2e-27 127.5 402 30.6
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 6.8e-27 127.1 376 31.1
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.2e-26 126.3 366 32.2
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.5e-26 125.9 351 32.2
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 4.4e-26 124.4 929 25.5
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 7.6e-26 123.6 360 31.7
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 7.6e-26 123.6 354 31.6
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 9.9e-26 123.2 852 24.6
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.3e-25 122.9 1074 24.9
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.7e-25 122.5 359 31.2
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.7e-25 122.5 378 31.5
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 2.2e-25 122.1 352 33.0
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 2.9e-25 121.7 212 42.5
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.7e-25 121.3 338 30.2
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 6.4e-25 120.6 451 27.7
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 6.4e-25 120.6 538 28.4
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 6.4e-25 120.6 402 30.6
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 8.4e-25 120.2 810 25.8
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.1e-24 119.8 387 32.0
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 1.9e-24 119.0 372 29.8
BcaC03g14237 Brassica carinata HOM05D003788 ORTHO05D004633 2.4e-24 118.6 116 63.8
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.2e-24 118.2 359 32.6
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.1e-24 117.1 356 32.0
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.1e-23 115.5 376 29.8
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 4.6e-23 114.4 255 35.3
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 7.8e-23 113.6 1062 23.6
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 1.0e-22 113.2 401 29.9
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.7e-22 112.5 1175 22.8
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.7e-22 112.5 440 29.5
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 3.0e-22 111.7 356 30.1
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.5e-21 108.6 439 29.8
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.5e-21 108.6 418 29.4
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.3e-21 107.8 207 40.1
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 1.2e-20 106.3 971 23.3
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.8e-20 105.1 439 30.1
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 8.1e-20 103.6 971 24.6
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.1e-19 103.2 909 24.5
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 6.4e-17 94.0 386 28.8
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 2.1e-15 89.0 148 41.2
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 3.5e-15 88.2 160 38.8
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.0e-15 87.4 297 31.0
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 9.0e-11 73.6 174 31.0
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 3.2e-08 65.1 63 55.6
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 4.2e-08 64.7 244 29.1
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 2.7e-07 62.0 361 28.3
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 7.9e-07 60.5 83 44.6
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 1.7e-06 59.3 308 23.1


User provided reference genes

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