Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04380 Brassica carinata HOM05D001024 ORTHO05D032905 1.4e-44 182.6 89 100.0
BolC3t14035H Brassica oleracea HOM05D001024 ORTHO05D000878 4.8e-18 94.4 47 95.7
BcaC01g06403 Brassica carinata HOM05D001024 ORTHO05D000878 6.3e-18 94.0 45 100.0
C03p16080 Brassica napus HOM05D001024 ORTHO05D000878 6.3e-18 94.0 45 100.0
BcaB01g04381 Brassica carinata HOM05D001024 ORTHO05D000878 1.2e-16 89.7 45 95.6
A03p13710 Brassica napus HOM05D001024 ORTHO05D000878 1.2e-16 89.7 45 95.6
BraA03t10674Z Brassica rapa HOM05D001024 ORTHO05D000878 1.2e-16 89.7 45 95.6
Sp6g17990 Schrenkiella parvula HOM05D001024 ORTHO05D000878 3.3e-14 81.6 48 87.5
Thhalv10014150m.g Eutrema salsugineum HOM05D001024 ORTHO05D000878 7.2e-14 80.5 48 85.4
AT5G56140 Arabidopsis thaliana HOM05D001024 ORTHO05D000878 2.1e-13 79.0 48 83.3
Carub.0008s1646 Capsella rubella HOM05D001024 ORTHO05D000878 6.1e-13 77.4 48 81.2
Aa31LG3G12050 Aethionema arabicum HOM05D001024 ORTHO05D000878 9.8e-11 70.1 48 75.0
BraA10t43437Z Brassica rapa HOM05D001024 ORTHO05D000878 2.2e-10 68.9 53 66.0
THA.LOC104813259 Tarenaya hassleriana HOM05D001024 ORTHO05D000878 2.8e-10 68.6 48 72.9
C08p02120 Brassica napus HOM05D001024 ORTHO05D032770 6.3e-10 67.4 60 66.7
BolC8t47008H Brassica oleracea HOM05D001024 ORTHO05D032770 6.3e-10 67.4 60 66.7
AT4G26480 Arabidopsis thaliana HOM05D001024 ORTHO05D000878 8.3e-10 67.0 48 75.0
THA.LOC104817721 Tarenaya hassleriana HOM05D001024 ORTHO05D000878 1.1e-09 66.6 48 68.8
Carub.0007s1442 Capsella rubella HOM05D001024 ORTHO05D000878 1.4e-09 66.2 48 75.0
Sp7g24420 Schrenkiella parvula HOM05D001024 ORTHO05D000878 1.4e-09 66.2 48 75.0
Thhalv10025796m.g Eutrema salsugineum HOM05D001024 ORTHO05D000878 2.4e-09 65.5 48 72.9
BcaC04g20122 Brassica carinata HOM05D001024 ORTHO05D000878 3.1e-09 65.1 46 73.9
C09p47290 Brassica napus HOM05D001024 ORTHO05D000878 3.1e-09 65.1 46 73.9
BolC9t57586H Brassica oleracea HOM05D001024 ORTHO05D000878 3.1e-09 65.1 46 73.9
PGR083G1809 Punica granatum HOM05D001024 ORTHO05D000878 4.1e-09 64.7 48 66.7
BcaNung02415 Brassica carinata HOM05D001024 ORTHO05D000878 5.4e-09 64.3 48 70.8
A01p17730 Brassica napus HOM05D001024 ORTHO05D000878 5.4e-09 64.3 48 70.8
C01p22400 Brassica napus HOM05D001024 ORTHO05D000878 5.4e-09 64.3 48 70.8
BolC1t02171H Brassica oleracea HOM05D001024 ORTHO05D000878 5.4e-09 64.3 48 70.8
BraA01t01728Z Brassica rapa HOM05D001024 ORTHO05D000878 5.4e-09 64.3 48 70.8
Aa31LG5G11830 Aethionema arabicum HOM05D001024 ORTHO05D000878 9.2e-09 63.5 48 68.8
BcaC09g50713 Brassica carinata HOM05D001024 ORTHO05D000878 9.2e-09 63.5 48 68.8
A10p13360 Brassica napus HOM05D001024 ORTHO05D000878 9.2e-09 63.5 46 71.7
AUR62017173 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.7e-08 62.0 48 66.7
BcaC06g32741 Brassica carinata HOM05D001024 ORTHO05D000878 3.5e-08 61.6 49 69.4
AUR62035633 Chenopodium quinoa HOM05D001024 ORTHO05D000878 5.9e-08 60.8 48 64.6
AL8G31770 Arabidopsis lyrata HOM05D001024 ORTHO05D000878 1.0e-07 60.1 36 77.8
Eucgr.F03650 Eucalyptus grandis HOM05D001024 ORTHO05D000878 1.0e-07 60.1 58 51.7
RcHm_v2.0_Chr5g0074821 Rosa chinensis HOM05D001024 ORTHO05D000878 1.0e-07 60.1 48 62.5
CiPaw.11G209800 Carya illinoinensis HOM05D001024 ORTHO05D000878 1.3e-07 59.7 48 62.5
Nn1g07656 Nelumbo nucifera HOM05D001024 ORTHO05D000878 1.3e-07 59.7 54 57.4
QL08p000721 Quercus lobata HOM05D001024 ORTHO05D000878 1.3e-07 59.7 48 62.5
Sed0007391 Sechium edule HOM05D001024 ORTHO05D000878 1.3e-07 59.7 48 64.6
TWI38G0729 Tripterygium wilfordii HOM05D001024 ORTHO05D000878 1.3e-07 59.7 48 62.5
ATR0751G254 Amborella trichopoda HOM05D001024 ORTHO05D000878 1.7e-07 59.3 48 60.4
EL10Ac4g07498 Beta vulgaris HOM05D001024 ORTHO05D000878 1.7e-07 59.3 48 62.5
Potri.011G168000 Populus trichocarpa HOM05D001024 ORTHO05D000878 1.7e-07 59.3 48 62.5
A03p56760 Brassica napus HOM05D001024 ORTHO05D000878 2.3e-07 58.9 50 68.0
C07p55300 Brassica napus HOM05D001024 ORTHO05D000878 2.3e-07 58.9 50 68.0
BolC7t45984H Brassica oleracea HOM05D001024 ORTHO05D000878 2.3e-07 58.9 50 68.0
BraA03t14744Z Brassica rapa HOM05D001024 ORTHO05D000878 2.3e-07 58.9 50 68.0
Glyma.04G111900 Glycine max HOM05D001024 ORTHO05D000878 2.3e-07 58.9 48 60.4
Glyma.06G322300 Glycine max HOM05D001024 ORTHO05D000878 2.3e-07 58.9 48 60.4
TAR624G0133 Trochodendron aralioides HOM05D001024 ORTHO05D000878 2.3e-07 58.9 48 60.4
BcaB08g35979 Brassica carinata HOM05D001024 ORTHO05D000878 2.9e-07 58.5 47 70.2
FvH4_3g41740 Fragaria vesca HOM05D001024 ORTHO05D000878 2.9e-07 58.5 48 60.4
FAN11G1760 Fragaria x ananassa HOM05D001024 ORTHO05D000878 2.9e-07 58.5 48 60.4
FAN16G0097 Fragaria x ananassa HOM05D001024 ORTHO05D000878 2.9e-07 58.5 48 60.4
FAN21G1167 Fragaria x ananassa HOM05D001024 ORTHO05D000878 2.9e-07 58.5 48 60.4
Prupe.6G033400 Prunus persica HOM05D001024 ORTHO05D000878 2.9e-07 58.5 48 60.4
arahy.Tifrunner.gnm1.ann1.LAQ4UI Arachis hypogaea HOM05D001024 ORTHO05D000878 3.9e-07 58.2 48 60.4
arahy.Tifrunner.gnm1.ann1.M54HFV Arachis hypogaea HOM05D001024 ORTHO05D000878 3.9e-07 58.2 48 60.4
Os02g0722700 Oryza sativa ssp. japonica HOM05D001024 ORTHO05D000878 3.9e-07 58.2 49 63.3
Cfa016952 Carpinus fangiana HOM05D001024 ORTHO05D000878 6.6e-07 57.4 48 60.4
Haze_09908 Corylus avellana HOM05D001024 ORTHO05D000878 6.6e-07 57.4 48 58.3
Duzib268G1154 Durio zibethinus HOM05D001024 ORTHO05D000878 6.6e-07 57.4 50 58.0
GSVIVG01014762001 Vitis vinifera HOM05D001024 ORTHO05D000878 6.6e-07 57.4 48 60.4
MBI15_g06345_MAGBIO Magnolia biondii HOM05D001024 ORTHO05D032905 8.6e-07 57.0 48 60.4
Potri.001G471000 Populus trichocarpa HOM05D001024 ORTHO05D000878 8.6e-07 57.0 48 60.4
SGA_v2.0_scaffold7G03540 Striga asiatica HOM05D001024 ORTHO05D000878 8.6e-07 57.0 48 62.5
Gohir.D05G387800 Gossypium hirsutum HOM05D001024 ORTHO05D000878 1.1e-06 56.6 48 60.4
Gorai.009G454400 Gossypium raimondii HOM05D001024 ORTHO05D000878 1.1e-06 56.6 48 60.4
Lj3g0016658 Lotus japonicus HOM05D001024 ORTHO05D000878 1.1e-06 56.6 48 60.4
PSO541G0198 Papaver somniferum HOM05D001024 ORTHO05D000878 1.5e-06 56.2 48 54.2
PSO675G4135 Papaver somniferum HOM05D001024 ORTHO05D000878 1.5e-06 56.2 48 54.2
TWI38G0321 Tripterygium wilfordii HOM05D001024 ORTHO05D000878 1.5e-06 56.2 48 58.3
ClCG09G021710 Citrullus lanatus HOM05D001024 ORTHO05D000878 1.9e-06 55.8 48 60.4
MELO3C013221.2 Cucumis melo HOM05D001024 ORTHO05D000878 1.9e-06 55.8 48 60.4
CsaV3_7G021340 Cucumis sativus L. HOM05D001024 ORTHO05D000878 1.9e-06 55.8 48 60.4
Nn1g07404 Nelumbo nucifera HOM05D001024 ORTHO05D032905 1.9e-06 55.8 55 52.7
Atru.chr2.3784 Acer truncatum HOM05D001024 ORTHO05D000878 2.5e-06 55.5 48 60.4
CANSAT11G2148 Cannabis sativa HOM05D001024 ORTHO05D000878 2.5e-06 55.5 48 58.3
Nn1g08290 Nelumbo nucifera HOM05D001024 ORTHO05D000878 2.5e-06 55.5 49 61.2
Thecc.07G002800 Theobroma cacao HOM05D001024 ORTHO05D000878 3.3e-06 55.1 48 60.4
Zm00001eb189130 Zea mays HOM05D001024 ORTHO05D000878 3.3e-06 55.1 53 56.6
Lalb_Chr15g0079991 Lupinus albus HOM05D001024 ORTHO05D000878 4.3e-06 54.7 48 58.3
MSTRG.7035 Avicennia marina HOM05D001024 ORTHO05D000878 5.6e-06 54.3 48 58.3
TWI39G0657 Tripterygium wilfordii HOM05D001024 ORTHO05D000878 5.6e-06 54.3 48 56.2
unitig_899.g15267 Utricularia gibba HOM05D001024 ORTHO05D000878 5.6e-06 54.3 48 58.3
Ciclev10009077m.g Citrus clementina HOM05D001024 ORTHO05D000878 7.3e-06 53.9 48 58.3
Hma1.2p1_0193F.1_g084250 Hydrangea macrophylla HOM05D001024 ORTHO05D000878 7.3e-06 53.9 48 58.3
Nitab4.5_0001303g0020 Nicotiana tabacum HOM05D001024 ORTHO05D000878 7.3e-06 53.9 79 41.8
Sc03g0011740 Simmondsia chinensis HOM05D001024 ORTHO05D000878 7.3e-06 53.9 66 45.5
BcaC07g36840 Brassica carinata HOM05D001024 ORTHO05D032770 9.5e-06 53.5 43 65.1
Cc05_g15610 Coffea canephora HOM05D001024 ORTHO05D000878 9.5e-06 53.5 48 58.3
MBI14_g43559_MAGBIO Magnolia biondii HOM05D001024 ORTHO05D000878 9.5e-06 53.5 51 56.9
MD03G1041200 Malus domestica HOM05D001024 ORTHO05D000878 9.5e-06 53.5 50 54.0


User provided reference genes

Program Settings