Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 3.9e-48 194.5 100 100.0
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 3.8e-35 151.4 101 81.2
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 5.4e-34 147.5 104 79.8
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 2.7e-33 145.2 97 81.4
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 7.8e-33 143.7 97 80.4
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 1.3e-32 142.9 97 80.4
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 3.9e-32 141.4 97 79.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.2e-28 129.8 99 69.7
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 7.6e-28 127.1 98 69.4
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 1.3e-24 116.3 103 72.8
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 3.0e-24 115.2 99 70.7
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.5e-23 112.8 100 69.0
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 7.9e-17 90.5 53 84.9
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 7.9e-17 90.5 53 84.9
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.4e-13 79.7 54 74.1
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 1.2e-12 76.6 95 49.5
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 4.9e-11 71.2 95 49.5
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 1.4e-10 69.7 86 48.8
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 2.5e-10 68.9 104 43.3
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.2e-10 68.6 55 60.0
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 5.5e-10 67.8 55 63.6
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 9.3e-10 67.0 89 49.4
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.7e-09 65.5 70 57.1
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 2.7e-09 65.5 55 63.6
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 2.7e-09 65.5 55 61.8
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 3.5e-09 65.1 59 54.2
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 4.6e-09 64.7 94 47.9
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.9e-09 63.9 60 60.0
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 1.0e-08 63.5 92 47.8
BcaC01g06401 Brassica carinata HOM05D006736 ORTHO05D008459 1.3e-08 63.2 48 72.9
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-08 63.2 60 60.0
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.3e-08 63.2 60 60.0
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.3e-08 63.2 63 58.7
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.1e-08 61.2 46 63.0
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 6.7e-08 60.8 57 54.4
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 6.7e-08 60.8 60 53.3
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 8.7e-08 60.5 78 47.4
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 8.7e-08 60.5 57 54.4
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 8.7e-08 60.5 57 54.4
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 8.7e-08 60.5 57 54.4
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 8.7e-08 60.5 88 48.9
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 1.1e-07 60.1 79 48.1
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.5e-07 59.7 87 46.0
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.9e-07 59.3 38 65.8
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 1.9e-07 59.3 94 47.9
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.5e-07 58.9 35 71.4
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 3.3e-07 58.5 36 69.4
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 4.3e-07 58.2 39 64.1
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.4e-07 57.4 38 63.2
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 7.4e-07 57.4 38 63.2
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 7.4e-07 57.4 97 41.2
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 9.6e-07 57.0 77 42.9
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 9.6e-07 57.0 50 58.0
ATR0824G192 Amborella trichopoda HOM05D007247 ORTHO05D009208 1.3e-06 56.6 65 44.6
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 1.3e-06 56.6 81 43.2
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 1.3e-06 56.6 50 58.0
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.6e-06 56.2 70 42.9
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.6e-06 56.2 90 43.3
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 1.6e-06 56.2 69 44.9
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 2.1e-06 55.8 54 59.3
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.1e-06 55.8 40 67.5
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.1e-06 55.8 47 59.6
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 2.1e-06 55.8 68 47.1
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 2.8e-06 55.5 44 61.4
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 3.7e-06 55.1 83 43.4
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 3.7e-06 55.1 54 57.4
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 3.7e-06 55.1 54 55.6
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 6.2e-06 54.3 38 60.5
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 8.2e-06 53.9 33 72.7
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 8.2e-06 53.9 64 46.9
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 8.2e-06 53.9 87 44.8
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 8.2e-06 53.9 82 40.2
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 8.2e-06 53.9 66 43.9
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 8.2e-06 53.9 38 63.2
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 8.2e-06 53.9 95 40.0


User provided reference genes

Program Settings