Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 9.0e-136 486.9 239 100.0
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 6.3e-129 464.2 239 94.1
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 8.5e-126 453.8 237 92.0
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 5.5e-125 451.1 237 91.6
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 3.7e-121 438.3 236 89.4
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.8e-118 428.3 239 87.4
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.8e-115 419.5 237 85.2
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.5e-114 416.4 239 84.1
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 2.8e-113 412.1 239 83.7
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.1e-112 410.2 240 82.5
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 6.9e-112 407.5 239 83.7
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-111 406.4 239 83.3
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.0e-111 406.0 207 93.7
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.3e-110 403.3 207 94.2
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 4.4e-106 388.3 208 90.9
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 4.8e-105 384.8 208 90.4
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 8.2e-105 384.0 208 89.9
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 4.1e-104 381.7 208 88.9
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.7e-102 376.3 235 77.4
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 2.8e-97 359.0 235 72.8
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.2e-95 353.6 234 70.1
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 1.2e-95 353.6 235 71.9
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 2.7e-95 352.4 237 70.0
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 3.8e-94 348.6 243 67.9
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 5.0e-94 348.2 237 69.6
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 5.0e-94 348.2 243 68.3
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 6.5e-94 347.8 234 69.7
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 8.5e-94 347.4 243 67.5
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.5e-93 346.7 244 69.3
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.9e-93 346.3 238 67.6
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 2.5e-93 345.9 247 66.8
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 4.2e-93 345.1 243 70.0
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.2e-92 343.6 243 68.3
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 1.6e-92 343.2 247 66.0
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.6e-92 343.2 234 69.7
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 3.6e-92 342.0 242 66.9
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 4.7e-92 341.7 243 67.5
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 6.1e-92 341.3 243 67.1
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 8.0e-92 340.9 243 68.3
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 8.0e-92 340.9 245 65.3
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.4e-91 340.1 247 66.8
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 1.4e-91 340.1 238 68.1
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.8e-91 339.7 243 67.1
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 3.0e-91 339.0 244 66.0
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 3.0e-91 339.0 245 67.8
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 4.0e-91 338.6 247 65.2
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 4.0e-91 338.6 243 65.8
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 6.8e-91 337.8 242 67.8
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 6.8e-91 337.8 243 65.4
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 2.0e-90 336.3 243 66.3
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.6e-90 335.9 237 66.2
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.4e-90 335.5 248 64.5
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 4.4e-90 335.1 237 65.4
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 7.5e-90 334.3 242 67.4
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 1.3e-89 333.6 245 66.5
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.3e-89 333.6 237 66.2
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 1.7e-89 333.2 237 65.4
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 2.2e-89 332.8 236 67.8
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.7e-89 332.0 237 65.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 3.7e-89 332.0 237 66.7
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 3.7e-89 332.0 243 65.0
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 8.3e-89 330.9 243 65.8
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 1.1e-88 330.5 242 65.7
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 2.4e-88 329.3 243 65.8
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.1e-88 328.9 243 65.0
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 4.1e-88 328.6 237 64.6
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 4.1e-88 328.6 237 64.6
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 5.4e-88 328.2 244 66.0
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 1.6e-87 326.6 238 66.4
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.6e-87 326.6 243 64.6
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.6e-87 326.6 237 65.4
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 2.7e-87 325.9 280 58.2
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.7e-87 325.9 244 64.3
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 4.5e-87 325.1 238 66.8
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 4.5e-87 325.1 235 67.7
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 5.9e-87 324.7 244 65.2
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 5.9e-87 324.7 216 70.8
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 7.7e-87 324.3 243 66.3
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.7e-86 323.2 237 62.4
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 2.3e-86 322.8 242 64.9
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.3e-86 322.8 245 63.3
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 5.0e-86 321.6 235 66.4
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 1.6e-84 316.6 235 65.5
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 2.8e-84 315.8 242 65.3
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 6.8e-83 311.2 216 67.1
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.4e-82 308.9 168 87.5
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 5.7e-82 308.1 244 63.1
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 2.8e-81 305.8 271 57.6
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 8.3e-81 304.3 235 64.3
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.9e-78 295.8 243 60.5
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 2.5e-77 292.7 199 69.3
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 7.3e-77 291.2 218 70.2
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 9.5e-77 290.8 199 69.3
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 1.2e-76 290.4 200 68.0
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.7e-76 288.5 216 65.7
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 4.0e-75 285.4 192 69.8
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 6.8e-75 284.6 240 59.2
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 1.2e-74 283.9 255 55.7
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.2e-74 283.9 196 67.9
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 7.5e-74 281.2 178 73.0
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 4.9e-73 278.5 203 67.0
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-72 277.3 239 54.4
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.4e-72 276.9 239 54.8
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 1.4e-72 276.9 264 53.4
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.2e-72 274.2 233 58.4
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-71 273.9 239 55.6
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.6e-71 273.5 243 58.8
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 3.5e-71 272.3 239 54.0
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 3.0e-70 269.2 196 64.8
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 6.6e-70 268.1 228 64.9
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 5.6e-69 265.0 240 52.9
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 6.2e-68 261.5 185 67.0
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.3e-65 253.8 189 63.5
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.2e-63 247.3 233 52.4
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.2e-63 247.3 194 66.5
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 8.6e-62 241.1 230 56.5
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 3.3e-61 239.2 237 53.2
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 2.1e-60 236.5 164 67.1
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.8e-59 233.4 242 52.9
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-57 225.3 221 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 8.3e-57 224.6 218 52.3
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 2.1e-55 219.9 214 49.5
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.5e-55 219.2 212 55.7
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.3e-54 216.5 208 53.4
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 8.6e-54 214.5 172 62.8
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 5.6e-53 211.8 241 51.9
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 4.7e-52 208.8 142 71.1
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.6e-50 203.0 196 52.0
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 4.9e-49 198.7 196 53.6
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 4.1e-48 195.7 129 72.1
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 4.1e-48 195.7 166 57.8
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 5.4e-48 195.3 172 57.0
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.5e-45 187.2 189 51.3
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.3e-41 174.1 219 42.9
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 2.9e-41 172.9 107 74.8
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.1e-35 154.5 104 67.3
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.5e-34 150.6 106 63.2
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 6.4e-33 145.2 103 67.0
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 4.2e-32 142.5 106 66.0
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.2e-31 141.0 100 66.0
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 9.9e-26 121.3 225 37.3
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.2e-23 114.4 156 42.9
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 4.6e-23 112.5 161 37.9
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.8e-20 103.2 101 49.5
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.6e-15 85.9 69 59.4
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.5e-13 80.1 72 55.6
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.6e-12 77.4 55 60.0
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 4.8e-12 75.9 108 37.0
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 6.3e-12 75.5 82 45.1
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 3.1e-11 73.2 65 58.5
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.4e-08 64.3 82 39.0
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-07 61.2 44 61.4


User provided reference genes

Program Settings