Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04352 Brassica carinata HOM05D000404 ORTHO05D010182 1.6e-79 299.3 143 100.0
C03p16310 Brassica napus HOM05D000404 ORTHO05D010182 2.2e-57 225.7 109 100.0
BolC3t14054H Brassica oleracea HOM05D000404 ORTHO05D010182 8.5e-57 223.8 109 99.1
A03p13860 Brassica napus HOM05D000404 ORTHO05D010182 3.0e-54 215.3 109 95.4
BraA03t10689Z Brassica rapa HOM05D000404 ORTHO05D010182 3.0e-54 215.3 109 95.4
Sp6g17610 Schrenkiella parvula HOM05D000404 ORTHO05D010182 5.5e-48 194.5 109 88.1
Thhalv10013225m.g Eutrema salsugineum HOM05D000404 ORTHO05D010182 8.0e-47 190.7 109 85.3
BcaB05g22222 Brassica carinata HOM05D000404 ORTHO05D010182 6.8e-46 187.6 109 86.2
Aa31LG3G11620 Aethionema arabicum HOM05D000404 ORTHO05D010182 2.6e-45 185.7 109 81.7
BolC2t07692H Brassica oleracea HOM05D000404 ORTHO05D010182 2.6e-45 185.7 109 88.1
Carub.0008s1607 Capsella rubella HOM05D000404 ORTHO05D010182 9.8e-45 183.7 109 83.5
AL8G31280 Arabidopsis lyrata HOM05D000404 ORTHO05D010182 2.2e-44 182.6 109 81.7
C02p15890 Brassica napus HOM05D000404 ORTHO05D010182 4.8e-44 181.4 109 86.2
AT5G55700 Arabidopsis thaliana HOM05D000404 ORTHO05D010182 8.3e-44 180.6 109 81.7
BraA02t06019Z Brassica rapa HOM05D000404 ORTHO05D010182 7.7e-42 174.1 109 84.4
A02p09550 Brassica napus HOM05D000404 ORTHO05D010182 1.7e-41 172.9 109 83.5
BcaC01g06388 Brassica carinata HOM05D000404 ORTHO05D010182 8.6e-41 170.6 109 83.5
THA.LOC104811661 Tarenaya hassleriana HOM05D000404 ORTHO05D010182 1.8e-35 152.9 109 65.1
Cpa.g.sc12.148 Carica papaya HOM05D000404 ORTHO05D010182 4.1e-27 125.2 109 59.6
Dinv10331 Davidia involucrata HOM05D000404 ORTHO05D010182 3.2e-19 99.0 111 49.5
Manes.15G060100 Manihot esculenta HOM05D000404 ORTHO05D010182 7.8e-18 94.4 111 49.5
GSVIVG01014681001 Vitis vinifera HOM05D000404 ORTHO05D010182 1.3e-17 93.6 111 50.5
Lsat_1_v5_gn_5_1760 Lactuca sativa HOM05D000404 ORTHO05D010182 9.5e-16 87.4 84 51.2
COL.COLO4_09827 Corchorus olitorius HOM05D000404 ORTHO05D010182 1.1e-14 84.0 101 45.5
Duzib268G1379 Durio zibethinus HOM05D000404 ORTHO05D010182 1.4e-14 83.6 72 56.9
Thecc.07G014200 Theobroma cacao HOM05D000404 ORTHO05D010182 2.3e-14 82.8 101 44.6
Prupe.4G243300 Prunus persica HOM05D000404 ORTHO05D010182 3.1e-14 82.4 69 65.2
Duzib213G0365 Durio zibethinus HOM05D000404 ORTHO05D010182 6.8e-14 81.3 82 51.2
TAR629G2109 Trochodendron aralioides HOM05D000404 ORTHO05D010182 8.9e-14 80.9 109 43.1
HanXRQChr05g0159871 Helianthus annuus HOM05D000404 ORTHO05D010182 2.6e-13 79.3 70 58.6
EL10Ac4g07571 Beta vulgaris HOM05D000404 ORTHO05D010182 5.8e-13 78.2 85 45.9
MD11G1199800 Malus domestica HOM05D000404 ORTHO05D010182 1.3e-12 77.0 111 43.2
Nn1g03178 Nelumbo nucifera HOM05D000404 ORTHO05D010182 2.2e-12 76.3 109 37.6
Gohir.A08G025000 Gossypium hirsutum HOM05D000404 ORTHO05D010182 3.7e-12 75.5 77 45.5
Gohir.D08G035500 Gossypium hirsutum HOM05D000404 ORTHO05D010182 3.7e-12 75.5 77 45.5
Gorai.004G033500 Gossypium raimondii HOM05D000404 ORTHO05D010182 3.7e-12 75.5 77 45.5
MD03G1181200 Malus domestica HOM05D000404 ORTHO05D010182 6.4e-12 74.7 70 55.7
AUR62036453 Chenopodium quinoa HOM05D000404 ORTHO05D010182 4.1e-11 72.0 111 41.4
Hund23114 Selenicereus undatus HOM05D000404 ORTHO05D010182 5.4e-11 71.6 85 42.4
AUR62017100 Chenopodium quinoa HOM05D000404 ORTHO05D010182 9.2e-11 70.9 77 51.9
Actinidia05008 Actinidia chinensis HOM05D000404 ORTHO05D010182 3.5e-10 68.9 108 42.6
FAN16G0062 Fragaria x ananassa HOM05D000404 ORTHO05D010182 6.0e-10 68.2 110 42.7
Rhsim06G0229300 Rhododendron simsii HOM05D000404 ORTHO05D010182 6.0e-10 68.2 116 39.7
FvH4_3g29220 Fragaria vesca HOM05D000404 ORTHO05D010182 2.3e-09 66.2 88 45.5
PSO541G3796 Papaver somniferum HOM05D000404 ORTHO05D010182 2.3e-09 66.2 85 49.4
Lj1C889T5 Lonicera japonica HOM05D000404 ORTHO05D010182 3.0e-09 65.9 78 46.2
FAN11G2719 Fragaria x ananassa HOM05D000404 ORTHO05D010182 8.6e-09 64.3 117 38.5
FAN25G1518 Fragaria x ananassa HOM05D000404 ORTHO05D010182 8.6e-09 64.3 117 38.5
vmacro11585 Vaccinium macrocarpon HOM05D000404 ORTHO05D010182 1.5e-08 63.5 123 38.2
MELO3C014105.2 Cucumis melo HOM05D000404 ORTHO05D010182 2.5e-08 62.8 87 42.5
ClCG10G004310 Citrullus lanatus HOM05D000404 ORTHO05D010182 3.3e-08 62.4 109 36.7
RcHm_v2.0_Chr5g0053651 Rosa chinensis HOM05D000404 ORTHO05D010182 4.3e-08 62.0 109 36.7
ECA246G4839 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.8e-07 59.3 36 72.2
CSS0008897 Camellia sinensis var. sinensis HOM05D000404 ORTHO05D010182 3.6e-07 58.9 36 72.2
CsaV3_3G004100 Cucumis sativus L. HOM05D000404 ORTHO05D010182 3.6e-07 58.9 78 43.6
QL08p004183 Quercus lobata HOM05D000404 ORTHO05D010182 1.1e-06 57.4 65 52.3
FAN21G2627 Fragaria x ananassa HOM05D000404 ORTHO05D010182 3.1e-06 55.8 45 57.8


User provided reference genes

Program Settings