Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 2.3e-32 141.7 76 100.0
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 8.0e-30 133.3 72 97.2
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 8.0e-30 133.3 72 97.2
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 6.8e-29 130.2 72 94.4
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 2.6e-28 128.3 71 94.4
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 3.4e-28 127.9 71 94.4
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 7.5e-28 126.7 71 93.0
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 7.5e-28 126.7 71 93.0
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 1.3e-27 125.9 72 91.7
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 1.7e-27 125.6 72 91.7
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 2.2e-27 125.2 71 91.5
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 2.2e-27 125.2 72 91.7
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 2.2e-27 125.2 72 91.7
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 8.3e-27 123.2 72 88.9
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 8.3e-27 123.2 72 88.9
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 8.3e-27 123.2 72 88.9
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 1.1e-26 122.9 72 90.3
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 1.9e-26 122.1 71 88.7
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 6.0e-25 117.1 71 84.5
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 4.3e-23 110.9 71 83.1
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 5.2e-21 104.0 69 75.4
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 1.2e-20 102.8 71 76.1
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 5.8e-20 100.5 69 73.9
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 1.3e-19 99.4 71 71.8
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 1.7e-19 99.0 71 71.8
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 2.2e-19 98.6 69 71.0
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 2.2e-19 98.6 69 71.0
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 2.2e-19 98.6 69 71.0
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 2.2e-19 98.6 71 71.8
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 2.2e-19 98.6 66 74.2
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 2.9e-19 98.2 69 71.0
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 4.9e-19 97.4 71 71.8
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 6.4e-19 97.1 71 70.4
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 6.4e-19 97.1 71 70.4
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 6.4e-19 97.1 71 70.4
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 6.4e-19 97.1 71 69.0
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 8.3e-19 96.7 66 72.7
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 1.4e-18 95.9 66 72.7
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 1.4e-18 95.9 71 70.4
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 3.2e-18 94.7 71 64.8
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 4.1e-18 94.4 71 67.6
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 4.1e-18 94.4 63 74.6
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 9.2e-18 93.2 66 69.7
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 9.2e-18 93.2 66 71.2
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 1.2e-17 92.8 71 67.6
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 2.1e-17 92.0 71 66.2
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 2.7e-17 91.7 64 70.3
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 2.7e-17 91.7 66 71.2
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 2.7e-17 91.7 73 68.5
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 4.6e-17 90.9 71 66.2
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 7.8e-17 90.1 71 63.4
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 1.7e-16 89.0 86 58.1
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 1.7e-16 89.0 61 75.4
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 2.3e-16 88.6 70 64.3
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 3.0e-16 88.2 71 66.2
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 3.9e-16 87.8 66 63.6
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 5.1e-16 87.4 71 63.4
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 6.6e-16 87.0 66 65.2
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 8.6e-16 86.7 63 68.3
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 8.6e-16 86.7 63 66.7
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 1.1e-15 86.3 71 63.4
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 1.1e-15 86.3 71 60.6
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 1.5e-15 85.9 71 62.0
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 1.9e-15 85.5 71 63.4
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 1.9e-15 85.5 64 67.2
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 2.5e-15 85.1 71 60.6
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 3.3e-15 84.7 63 66.7
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 3.3e-15 84.7 64 65.6
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 5.6e-15 84.0 71 59.2
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 5.6e-15 84.0 97 51.5
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 7.3e-15 83.6 74 59.5
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 1.2e-14 82.8 64 62.5
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 1.6e-14 82.4 66 60.6
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 1.6e-14 82.4 69 60.9
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 2.8e-14 81.6 69 62.3
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 6.2e-14 80.5 71 57.7
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 8.1e-14 80.1 71 57.7
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 2.4e-13 78.6 89 53.9
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 2.4e-13 78.6 64 65.6
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 3.1e-13 78.2 67 59.7
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 4.0e-13 77.8 71 59.2
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 4.0e-13 77.8 64 62.5
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 5.2e-13 77.4 71 57.7
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 6.8e-13 77.0 61 63.9
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 6.8e-13 77.0 71 57.7
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 6.8e-13 77.0 71 53.5
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 1.2e-12 76.3 66 59.1
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 1.5e-12 75.9 66 56.1
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 1.5e-12 75.9 66 59.1
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 1.5e-12 75.9 71 56.3
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 2.6e-12 75.1 70 55.7
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.8e-12 73.9 71 59.2
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 9.9e-12 73.2 63 63.5
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 1.3e-11 72.8 70 57.1
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 1.7e-11 72.4 64 59.4
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 1.7e-11 72.4 64 57.8
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 2.2e-11 72.0 69 55.1
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 2.9e-11 71.6 130 38.5
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 2.9e-11 71.6 71 54.9
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 4.9e-11 70.9 71 53.5
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 6.4e-11 70.5 71 57.7
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 6.4e-11 70.5 71 53.5
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 8.4e-11 70.1 71 47.9
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 8.4e-11 70.1 71 53.5
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 7.1e-10 67.0 41 75.6
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 1.2e-09 66.2 54 64.8
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 1.2e-09 66.2 41 78.0
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 1.2e-09 66.2 56 58.9
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.6e-09 65.9 43 72.1
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 2.1e-09 65.5 70 51.4
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 2.7e-09 65.1 70 52.9
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 3.5e-09 64.7 61 57.4
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 4.6e-09 64.3 63 55.6
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 6.0e-09 63.9 105 42.9
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 6.0e-09 63.9 71 49.3
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 7.8e-09 63.5 45 71.1
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 1.7e-08 62.4 41 70.7
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 3.3e-07 58.2 43 69.8
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 4.3e-07 57.8 41 63.4
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 4.3e-07 57.8 45 68.9
FvH4_4g29090 Fragaria vesca HOM05D000768 ORTHO05D046510 9.6e-07 56.6 48 64.6
Zm00001eb294050 Zea mays HOM05D006482 ORTHO05D008149 2.1e-06 55.5 76 44.7
Eucgr.E02459 Eucalyptus grandis HOM05D006482 ORTHO05D008149 3.6e-06 54.7 43 62.8


User provided reference genes

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